pak github action: install from the branch which triggered the ci
#69
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| # This workflow tests if the package can be installed from github from within | |
| # a github action. | |
| on: | |
| push: | |
| branches: [devel, master] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macos-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install libglpk40 (Ubuntu) | |
| if: ${{ matrix.config.os == 'ubuntu-latest' }} | |
| run: sudo apt-get install -y libglpk40 | |
| - name: Install xquartz (Mac OS) | |
| if: ${{ matrix.config.os == 'macos-latest' }} | |
| run: brew install --cask xquartz | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: Install pak | |
| run: Rscript -e 'install.packages("pak")' | |
| - name: Install OmnipathR from git by pak | |
| run: | | |
| Rscript -e \ | |
| 'pak::pkg_install("saezlab/OmnipathR@'${{ env.BRANCH_NAME }}'")' |