Use primary identifiers instead of names in identifiers table.

saezlab · Oct 24, 2024 · 3103d6b · 3103d6b
1 parent 5cb3579
commit 3103d6b
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/omnipath_metabo/schema/_structure.py b/omnipath_metabo/schema/_structure.py
@@ -66,7 +66,7 @@ class SwissLipids():
     name = 'SwissLipids'
     def __iter__(self):
         for met in swisslipids.swisslipids_lipids():
-            yield met['Lipid ID'], met['SMILES (pH7.3)']
+            yield met['Name'], met['SMILES (pH7.3)']
 
 
 class LipidMaps():
@@ -77,7 +77,7 @@ def __iter__(self):
 
         for met in sdf:
 
-            if smiles := met['name'].get('SMILES', None):
+            if smiles := met['id'].get('SMILES', None):
 
                 yield met['id'], smiles