inserting resource into resource table

saezlab · Oct 11, 2024 · 83ff782 · 83ff782
1 parent 89379d2
commit 83ff782
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Showing 2 changed files with 8 additions and 2 deletions.
diff --git a/omnipath_metabo/schema/_main.py b/omnipath_metabo/schema/_main.py
@@ -60,6 +60,12 @@ def __init__(self, resource, session):
 
 
     def load(self):
+
+        insert_resource = insert(_structure.Resource).values(
+            name = self.resource.name
+        )
+        insert_resource = insert_resource.on_conflict_do_nothing(index_elements=['name'])
+        self.session.execute(insert_resource)
 
         for i, row in enumerate(self.resource):
 

diff --git a/omnipath_metabo/schema/_structure.py b/omnipath_metabo/schema/_structure.py
@@ -40,15 +40,15 @@ class Resource(Base):
 
 class Hmdb():
     scheme = Structure
-
+    name = 'HMDB'
     def __iter__(self):
 
         for met in hmdb.metabolites_processed('name','smiles'):
             yield met[0]
 
 class SwissLipids():
     scheme = Structure
-
+    name = 'SwissLipids'
     def __iter__(self):
         for met in swisslipids.swisslipids_lipids():
             yield met['Lipid ID'], met['SMILES (pH7.3)']