reactome: url

saezlab · Feb 11, 2025 · 16ebbee · 16ebbee
1 parent 58c9535
commit 16ebbee
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diff --git a/pypath/inputs/reactome/__init__.py b/pypath/inputs/reactome/__init__.py
@@ -1,2 +1,7 @@
 # ChEBI2Reactome_PE_All_Levels: https://reactome.org/download/current/ChEBI2Reactome_PE_All_Levels.txt
-# pathway hierarchy: https://reactome.org/download/current/ReactomePathwaysRelation.txt
+# pathway hierarchy: https://reactome.org/download/current/ReactomePathwaysRelation.txt
+from pypath.resources import urls
+
+def reactome_raw(fname: str) -> Generator[tuple]:
+
+    url = urls.urls['reactomr']['txt'] % fname
diff --git a/pypath/resources/urls.py b/pypath/resources/urls.py
@@ -782,6 +782,7 @@
         'https://reactome.org/download/current/homo_sapiens.3.1.sbml.tgz',
         'biopax_l3': 'https://reactome.org/download/current/biopax.zip',
         'biopax_l2': 'https://reactome.org/download/current/biopax2.zip',
+        'txt': 'https://reactome.org/download/current/%s.txt',
     },
     'acsn': {
         'label': 'Atlas of Cancer Signaling Networks',