feat(model-ad): create api description for gene expression ct (MG-238… #171
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| types: | |
| - opened | |
| - ready_for_review | |
| - synchronize | |
| merge_group: | |
| env: | |
| # SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
| HEAD_REF: ${{ github.event_name == 'pull_request' && github.event.pull_request.head.ref || github.ref_name }} | |
| HEAD_REPOSITORY: ${{ github.event_name == 'pull_request' && github.event.pull_request.head.repo.full_name || github.repository }} | |
| NX_BRANCH: ${{ github.event_name == 'pull_request' && github.event.number || github.ref_name }} | |
| NX_CLOUD_ENCRYPTION_KEY: ${{ secrets.NX_CLOUD_ENCRYPTION_KEY }} | |
| jobs: | |
| push: | |
| runs-on: ubuntu-22.04-4core-16GBRAM-150GBSSD | |
| if: ${{ github.event_name != 'pull_request' }} | |
| env: | |
| NX_CLOUD_ACCESS_TOKEN: ${{ secrets.NX_CLOUD_ACCESS_TOKEN_READ_WRITE }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| name: Checkout ${{ env.HEAD_REPOSITORY }}:${{ env.HEAD_REF }} | |
| with: | |
| # We need to fetch all branches and commits so that Nx affected has a base to compare | |
| # against. | |
| fetch-depth: 0 | |
| - name: Derive appropriate SHAs for base and head for `nx affected` commands | |
| uses: nrwl/nx-set-shas@v4 | |
| - name: Set up the dev container | |
| uses: ./.github/actions/setup-dev-container | |
| - name: Prepare the affected projects | |
| run: | | |
| devcontainer exec --workspace-folder ../sage-monorepo bash -c ". ./dev-env.sh \ | |
| && workspace-install-affected" | |
| - name: Lint the affected projects | |
| run: | | |
| devcontainer exec --workspace-folder ../sage-monorepo bash -c ". ./dev-env.sh \ | |
| && nx affected --target=lint" | |
| - name: Build the affected projects | |
| run: | | |
| devcontainer exec --workspace-folder ../sage-monorepo bash -c ". ./dev-env.sh \ | |
| && nx affected --target=build,server" | |
| - name: Test the affected projects (unit) | |
| run: | | |
| devcontainer exec --workspace-folder ../sage-monorepo bash -c ". ./dev-env.sh \ | |
| && nx affected --target=test" | |
| - name: Test the affected projects (integration) | |
| run: | | |
| devcontainer exec --workspace-folder ../sage-monorepo bash -c ". ./dev-env.sh \ | |
| && nx affected --target=integration-test" | |
| # - name: Scan the affected projects with Sonar | |
| # run: | | |
| # devcontainer exec --workspace-folder ../sage-monorepo bash -c ". ./dev-env.sh \ | |
| # && nx affected --target=sonar" | |
| - name: Build and publish the images of the affected projects | |
| run: | | |
| devcontainer exec --workspace-folder ../sage-monorepo bash -c ". ./dev-env.sh \ | |
| && echo ${{ secrets.GITHUB_TOKEN }} | docker login ghcr.io -u ${{ github.actor }} --password-stdin \ | |
| && nx affected --target=build-image --configuration=edge" | |
| - name: Remove the dev container | |
| run: docker rm -f sage_devcontainer | |
| pr: | |
| runs-on: ubuntu-22.04-4core-16GBRAM-150GBSSD | |
| # Runs for any pull_request (fork or same-repo) | |
| if: github.event_name == 'pull_request' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| name: Checkout merge commit | |
| with: | |
| # We need to fetch all branches and commits so that Nx affected has a base to compare | |
| # against. | |
| fetch-depth: 0 | |
| - name: | |
| Switch from the detached HEAD of the merge commit to a new branch | |
| # Buildx does not work on a detached HEAD | |
| run: git switch -c new-branch | |
| - name: Derive appropriate SHAs for base and head for `nx affected` commands | |
| uses: nrwl/nx-set-shas@v4 | |
| - name: Set up the dev container | |
| uses: ./.github/actions/setup-dev-container | |
| - name: Prepare the affected projects | |
| run: | | |
| devcontainer exec --workspace-folder ../sage-monorepo bash -c ". ./dev-env.sh \ | |
| && workspace-install-affected" | |
| - name: Lint the affected projects | |
| run: | | |
| devcontainer exec --workspace-folder ../sage-monorepo bash -c ". ./dev-env.sh \ | |
| && nx affected --target=lint" | |
| - name: Build the affected projects | |
| run: | | |
| devcontainer exec --workspace-folder ../sage-monorepo bash -c ". ./dev-env.sh \ | |
| && nx affected --target=build,server" | |
| - name: Test the affected projects (unit) | |
| run: | | |
| devcontainer exec --workspace-folder ../sage-monorepo bash -c ". ./dev-env.sh \ | |
| && nx affected --target=test" | |
| - name: Test the affected projects (integration) | |
| run: | | |
| devcontainer exec --workspace-folder ../sage-monorepo bash -c ". ./dev-env.sh \ | |
| && nx affected --target=integration-test" | |
| - name: Build the images of the affected projects | |
| run: | | |
| devcontainer exec --workspace-folder ../sage-monorepo bash -c ". ./dev-env.sh \ | |
| && nx affected --target=build-image" | |
| - name: Remove the dev container | |
| run: docker rm -f sage_devcontainer |