Doc preparation for 0.10.0rc1 (#1129)

* Doc preparation for 0.10.0rc1 * Update release notes * Final touches
scverse · Sep 9, 2023 · 40a4878 · 40a4878
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diff --git a/anndata/experimental/merge.py b/anndata/experimental/merge.py
@@ -427,6 +427,7 @@ def concat_on_disk(
     arrays use the max_loaded_elems argument; for dense arrays
     see the Dask documentation, as the Dask concatenation function is used
     to concatenate dense arrays in this function
+
     Params
     ------
     in_files

diff --git a/docs/api.md b/docs/api.md
@@ -103,6 +103,15 @@ Interface for accessing on-disk sparse data:
    experimental.CSCDataset
 ```
 
+Out of core concatenation
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated/
+
+   experimental.concat_on_disk
+```
+
 Low level methods for reading and writing elements of an `` AnnData` `` object to a store:
 
 ```{eval-rst}

diff --git a/docs/index.md b/docs/index.md
@@ -9,16 +9,13 @@
 ```{include} ../README.md
 ```
 
-# News
-
-```{include} news.md
-```
-
 # Latest additions
 
 ```{include} release-notes/release-latest.md
 ```
 
+See {doc}`/release-notes/index` for more.
+
 ```{toctree}
 :hidden: true
 :maxdepth: 1
@@ -33,3 +30,8 @@ contributing
 release-notes/index
 references
 ```
+
+# News
+
+```{include} news.md
+```
diff --git a/docs/release-notes/0.10.0.md b/docs/release-notes/0.10.0.md
@@ -1,24 +1,36 @@
-### 0.10.0 {small}`the future`
+### 0.10.0rc1 {small}`2023-09-09`
+
+````{note}
+anndata 0.10.0 is currently available as a release candidate for testing. You can install this version of anndata with:
+
+```
+pip install -U --pre anndata
+```
+
+We expect to make a full release by October.
+````
 
 ```{rubric} Features
 ```
 
 **GPU Support**
 
-* Support for dense and sparse cupy arrays {pr}`1066` {user}`ivirshup`
+* Dense and sparse [`CuPy`](https://docs.cupy.dev/l) arrays are now supported {pr}`1066` {user}`ivirshup`
+    * Once you have `CuPy` arrays in your anndata, use it with: [`rapids-singlecell`](https://rapids-singlecell.readthedocs.io/en/latest/index.html) from v0.9+
 * anndata now has GPU enabled CI. Made possibly by a grant from [CZI's EOSS program](https://chanzuckerberg.com/eoss/) and managed via [Cirun](https://Cirun.io) {pr}`1066` {pr}`1084` {user}`Zethson` {user}`ivirshup`
 
+**Out of core**
+
+* Concatenate on-disk anndata objects with {func}`anndata.experimental.concat_on_disk` {pr}`955` {user}`selmanozleyen`
+* AnnData can now hold dask arrays with `scipy.sparse.spmatrix` chunks {pr}`1114` {user}`ivirshup`
+* Public API for interacting with on disk sparse arrays: {func}`~anndata.experimental.sparse_dataset`, {class}`~anndata.experimental.CSRDataset`, and {class}`~anndata.experimental.CSCDataset` {pr}`765` {user}`ilan-gold` {user}`ivirshup`
+
 **Improved errors and warnings**
 
 * Improved error messages when combining dataframes with duplicated column names {pr}`1029` {user}`ivirshup`
 * Improved warnings when modifying views of `AlingedMappings` {pr}`1016` {user}`flying-sheep` {user}`ivirshup`
 * `AnnDataReadError`s have been removed. The original error is now thrown with additional information in a note {pr}`1055` {user}`ivirshup`
 
-**Out of core**
-
-* AnnData can now hold dask arrays with `scipy.sparse.spmatrix` chunks {pr}`1114` {user}`ivirshup`
-* Export {func}`~anndata.experimental.sparse_dataset`, {class}`~anndata.experimental.CSRDataset`, and {class}`~anndata.experimental.CSCDataset` from `experimental` to allow for use with `zarr` stores {pr}`765` {user}`ilan-gold` {user}`ivirshup`
-
 
 ```{rubric} Documentation
 ```
@@ -32,7 +44,7 @@
 ```{rubric} Other updates
 ```
 
-- Bump minimum python version to 3.9 {pr}`1117` {user}`flying-sheep`
+* Bump minimum python version to 3.9 {pr}`1117` {user}`flying-sheep`
 
 ```{rubric} Deprecations
 ```

diff --git a/docs/release-notes/index.md b/docs/release-notes/index.md
@@ -3,6 +3,25 @@
 ```{include} /release-notes/release-latest.md
 ```
 
+## Version 0.9
+
+```{include} /release-notes/0.9.2.md
+```
+
+```{include} /release-notes/0.9.1.md
+```
+
+```{include} /release-notes/0.9.0.md
+```
+
+## Version 0.8
+
+```{include} /release-notes/0.8.1.md
+```
+
+```{include} /release-notes/0.8.0.md
+```
+
 ## Version 0.7
 
 ```{include} /release-notes/0.7.8.md

diff --git a/docs/release-notes/release-latest.md b/docs/release-notes/release-latest.md
@@ -2,22 +2,3 @@
 
 ```{include} /release-notes/0.10.0.md
 ```
-
-## Version 0.9
-
-```{include} /release-notes/0.9.2.md
-```
-
-```{include} /release-notes/0.9.1.md
-```
-
-```{include} /release-notes/0.9.0.md
-```
-
-## Version 0.8
-
-```{include} /release-notes/0.8.1.md
-```
-
-```{include} /release-notes/0.8.0.md
-```