force multiprocessing instead of loky

Signed-off-by: Lukas Heumos <[email protected]>
scverse · Feb 21, 2025 · 07b8fc2 · 07b8fc2
1 parent 633771f
commit 07b8fc2
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/pertpy/__init__.py b/pertpy/__init__.py
@@ -6,9 +6,13 @@
 
 import warnings
 
+import joblib
 from matplotlib import MatplotlibDeprecationWarning
 from numba import NumbaDeprecationWarning
 
+# Loky seems to be broken at the moment
+joblib.parallel.DEFAULT_BACKEND = "multiprocessing"
+
 warnings.filterwarnings("ignore", category=NumbaDeprecationWarning)
 warnings.filterwarnings("ignore", category=MatplotlibDeprecationWarning)
 warnings.filterwarnings("ignore", category=SyntaxWarning)

diff --git a/pyproject.toml b/pyproject.toml
@@ -63,12 +63,8 @@ dependencies = [
     "pubchempy",
     "pyarrow",
     "blitzgsea",
+    "scikit-learn>=1.4",  # https://github.com/scverse/pertpy/issues/700
     "lamin_utils",
-    "joblib",
-    "scipy==1.15.0",
-    "torch==2.5.1",
-    "toytree==3.0.6",
-    "triton==3.1.0"
 ]
 
 [project.optional-dependencies]