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Add details in docs
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Signed-off-by: zethson <[email protected]>
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Zethson committed Feb 9, 2024
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Expand Up @@ -430,7 +430,7 @@ See [augur tutorial](https://pertpy.readthedocs.io/en/latest/tutorials/notebooks
tools.Augur
```

#### scGen
#### Gene expression prediction with scGen

scGen is a deep generative model that leverages autoencoders and adversarial training to integrate single-cell RNA sequencing data from different conditions or tissues,
enabling the generation of synthetic single-cell data for cross-condition analysis and predicting cell-type-specific responses to perturbations.
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See [scgen tutorial](https://pertpy.readthedocs.io/en/latest/tutorials/notebooks/scgen_perturbation_prediction.html) for a more elaborate tutorial.

#### CINEMA-OT
#### Causal perturbation analysis with CINEMA-OT

CINEMA-OT is a causal framework for perturbation effect analysis to identify individual treatment effects and synergy at the single cell level.
CINEMA-OT separates confounding sources of variation from perturbation effects to obtain an optimal transport matching that reflects counterfactual cell pairs.
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