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@segrelab

Segrè Lab

README.md

Daniel Segrè Lab at Boston University

Through mathematical modeling and experiments, we study the dynamics and evolution of metabolic networks in living systems. We are interested both in the fundamental principles of biological organization and in applications to environmental sustainability and human health.

To learn more about the lab, visit our website.

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  1. comets comets Public

    Computation of Microbial Ecosystems in Time and Space

    Java 22 11

  2. cometspy cometspy Public

    Python interface for running COMETS simulations and analyzing the results

    Python 12 9

  3. comets-toolbox comets-toolbox Public

    MATLAB scripts and utilities for the COMETS software for spatial DFBA

    MATLAB 2 3

  4. MiCoNE MiCoNE Public

    The Microbial Co-occurrence Network Explorer

    Python 19 4

Repositories

Showing 10 of 45 repositories
  • GEM-mit1002 Public
    segrelab/GEM-mit1002’s past year of commit activity
    Jupyter Notebook 0 CC-BY-4.0 0 41 0 Updated Mar 11, 2025
  • comets Public

    Computation of Microbial Ecosystems in Time and Space

    segrelab/comets’s past year of commit activity
    Java 22 MIT 11 23 0 Updated Mar 7, 2025
  • GEM-hot1a3 Public
    segrelab/GEM-hot1a3’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 28, 2025
  • GEM-atcc27126 Public
    segrelab/GEM-atcc27126’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 28, 2025
  • cometspy Public

    Python interface for running COMETS simulations and analyzing the results

    segrelab/cometspy’s past year of commit activity
    Python 12 GPL-3.0 9 21 0 Updated Feb 4, 2025
  • COMETS_Protocols Public

    COMETS simulations examples and protocols

    segrelab/COMETS_Protocols’s past year of commit activity
    Mathematica 1 CC0-1.0 3 1 0 Updated Feb 4, 2025
  • SNP23 Public

    Variant Calling on Marine Strains (2023)

    segrelab/SNP23’s past year of commit activity
    Shell 0 0 7 0 Updated Dec 16, 2024
  • MetabolicComplexityDivergence Public

    Code for "Metabolic complexity drives divergence in microbial communities"

    segrelab/MetabolicComplexityDivergence’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Nov 11, 2024
  • learn-fba Public

    Didactic materials for teaching FBA.

    segrelab/learn-fba’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Sep 25, 2024
  • iamm-collection Public
    segrelab/iamm-collection’s past year of commit activity
    R 0 0 1 0 Updated Sep 6, 2024
View all repositories

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