Merge pull request #131 from seqeralabs/rnaseq-full-guide

Platform tutorial: nf-core/rnaseq full

docusaurus.config.js

@@ -277,11 +277,13 @@ export default async function createConfigAsync() {
           "json",
           "yaml",
           "groovy",
+          "java",
           "ini",
           "nginx",
           "bash",
           "docker",
           "python",
+          "r",
           "typescript",
         ],
       },

platform_versioned_docs/version-23.4/getting-started/quickstart-demo/add-pipelines.mdx

@@ -37,7 +37,7 @@ To launch pipelines directly with CLI tools, select the **Launch Pipeline** tab
 ![Launch Seqera Pipeline](assets/seqera-pipelines-launch-cli.png)
 :::
 
-### Add nf-core/rnaseq from the Launchpad 
+### Add nf-core/rnaseq manually
 
 ![Add nf-core/rnaseq pipeline](assets/sp-cloud-add-rnaseq.gif)
 

platform_versioned_sidebars/version-23.4-sidebars.json

@@ -6,7 +6,8 @@
       "label": "Tutorials",
       "collapsed": true,
       "items": [
-        "getting-started/quickstart-demo/comm-showcase"
+        "getting-started/quickstart-demo/comm-showcase",
+        "getting-started/rnaseq"         
       ]
     },
     {
@@ -84,7 +85,6 @@
       "type": "category",
       "label": "Data",
       "items": [
-        "getting-started/quickstart-demo/add-data",
         "data/data-explorer",
         "data/datasets"
       ]
@@ -93,7 +93,6 @@
       "type": "category",
       "label": "Pipelines",
       "items": [
-        "getting-started/quickstart-demo/add-pipelines",
         "pipeline-schema/overview",
         "launch/launchpad",
         "labels/overview",
@@ -117,7 +116,6 @@
       "type": "category",
       "label": "Administration",
       "items": [
-        "getting-started/workspace-setup",
         "administration/overview",
         "orgs-and-teams/organizations",
         "orgs-and-teams/workspace-management",
@@ -186,11 +184,6 @@
       "label": "Developer tools",
       "collapsed": true,
       "items": [
-        {
-          "type": "doc",
-          "id": "getting-started/quickstart-demo/automation",
-          "label": "Overview"
-        },
         "api/overview",
         {
           "type": "category",

platform_versioned_sidebars/version-24.1-sidebars.json

@@ -6,8 +6,9 @@
       "label": "Tutorials",
       "collapsed": true,
       "items": [
-        "getting-started/quickstart-demo/comm-showcase"
-      ]
+        "getting-started/quickstart-demo/comm-showcase",
+        "getting-started/rnaseq"    
+        ]
     },
     {
       "type": "category",
@@ -85,7 +86,6 @@
       "type": "category",
       "label": "Data",
       "items": [
-        "getting-started/quickstart-demo/add-data",
         "data/data-explorer",
         "data/datasets"
       ]
@@ -94,7 +94,6 @@
       "type": "category",
       "label": "Pipelines",
       "items": [
-        "getting-started/quickstart-demo/add-pipelines",
         "pipeline-schema/overview",
         "launch/launchpad",
         "labels/overview",
@@ -119,7 +118,6 @@
       "type": "category",
       "label": "Administration",
       "items": [
-        "getting-started/workspace-setup",
         "administration/overview",
         "orgs-and-teams/organizations",
         "orgs-and-teams/workspace-management",
@@ -190,11 +188,6 @@
       "label": "Developer tools",
       "collapsed": true,
       "items": [
-        {
-          "type": "doc",
-          "id": "getting-started/quickstart-demo/automation",
-          "label": "Overview"
-        },
         "api/overview",
         {
           "type": "category",