Skip to content
nf-core linting

Important! Template update for nf-core/tools v3.2.0 #310

Sign in to view logs

Important! Template update for nf-core/tools v3.2.0

Important! Template update for nf-core/tools v3.2.0 #310

GitHub Actions / JUnit Test Report failed Feb 26, 2025 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

Annotations

Check failure on line 1 in nf

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

nf.Should run without failures 

Assertion failed: 

assert workflow.success
       |        |
       workflow false
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 25.01.0-edge
Launching `/home/runner/work/nf-aggregate/nf-aggregate/tests/../main.nf` [intergalactic_bernard] DSL2 - revision: 67e5fb1ec9
Downloading plugin [email protected]
Downloading plugin [email protected]
Input/output options
  input              : /home/runner/work/nf-aggregate/nf-aggregate/workflows/nf_aggregate/assets/test_run_ids.csv

Pipeline-specific options
  remove_failed_tasks: true

Generic options
  trace_report_suffix: 2025-02-26_17-29-44

Core Nextflow options
  runName            : intergalactic_bernard
  containerEngine    : docker
  launchDir          : /home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/f5583c8a72b28e34df69ebda7bff9056
  workDir            : /home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/f5583c8a72b28e34df69ebda7bff9056/work
  projectDir         : /home/runner/work/nf-aggregate/nf-aggregate
  userName           : runner
  profile            : test,docker
  configFiles        : /home/runner/work/nf-aggregate/nf-aggregate/nextflow.config, /home/runner/work/nf-aggregate/nf-aggregate/nextflow.config, /home/runner/work/nf-aggregate/nf-aggregate/tests/nextflow.config

!! Only displaying parameters that differ from the pipeline defaults !!
------------------------------------------------------
[85/ba24c1] Submitted process > NF_AGGREGATE:SEQERA_RUNS_DUMP (38QXz4OfQDpwOV)
[df/70bfac] Submitted process > NF_AGGREGATE:SEQERA_RUNS_DUMP (4Bi5xBK6E2Nbhj)
[7c/55cab4] Submitted process > NF_AGGREGATE:SEQERA_RUNS_DUMP (4LWT4uaXDaGcDY)
ERROR ~ Invalid method invocation `call` with arguments: /home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/f5583c8a72b28e34df69ebda7bff9056/work/85/ba24c1fe4a0a743be07fa7cfed3d34/versions.yml (sun.nio.fs.UnixPath) on _closure7 type

 -- Check '/home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/f5583c8a72b28e34df69ebda7bff9056/meta/nextflow.log' file for details
ERROR ~ Invalid method invocation `doCall` with arguments: [[id:38QXz4OfQDpwOV, workspace:community/showcase, group:[], runName:cranky_jepsen, workDir:s3://nf-tower-bucket/scratch/38QXz4OfQDpwOV, projectName:nf-core/scrnaseq, fusion:true], /home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/f5583c8a72b28e34df69ebda7bff9056/work/85/ba24c1fe4a0a743be07fa7cfed3d34/38QXz4OfQDpwOV] (java.util.ArrayList) on _closure9 type

 -- Check '/home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/f5583c8a72b28e34df69ebda7bff9056/meta/nextflow.log' file for details
WARN: Killing running tasks (2)
WARN: [NF_AGGREGATE:MULTIQC] Unable to resume cached task -- See log file for details
Nextflow stderr:
View more details on GitHub Actions