Skip to content
nf-core linting

pipeline level test with snapshots #327

Sign in to view logs

pipeline level test with snapshots

pipeline level test with snapshots #327

GitHub Actions / JUnit Test Report failed Feb 27, 2025 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

Annotations

Check failure on line 1 in Test Workflow NF_AGGREGATE

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

Test Workflow NF_AGGREGATE.Should run without failures 

Assertion failed: 

2 of 3 assertions failed
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 25.01.0-edge
Launching `/home/runner/work/nf-aggregate/nf-aggregate/.nf-test-c0ddcd2db0a903721258acc5d1602397.nf` [wise_faggin] DSL2 - revision: e941368843
Downloading plugin [email protected]
Downloading plugin [email protected]
[2a/5cf1e7] Submitted process > NF_AGGREGATE:SEQERA_RUNS_DUMP (4Bi5xBK6E2Nbhj)
[d8/c48941] Submitted process > NF_AGGREGATE:PLOT_RUN_GANTT (4Bi5xBK6E2Nbhj)
[1e/967a85] Submitted process > NF_AGGREGATE:MULTIQC
ERROR ~ Error executing process > 'NF_AGGREGATE:MULTIQC'

Caused by:
  Process `NF_AGGREGATE:MULTIQC` terminated with an error exit status (125)


Command executed:

  multiqc \
      --force \
       \
      --config multiqc_config.yml \
       \
       \
       \
       \
       \
      .
  
  cat <<-END_VERSIONS > versions.yml
  "NF_AGGREGATE:MULTIQC":
      multiqc: $( multiqc --version | sed -e "s/multiqc, version //g" )
  END_VERSIONS

Command exit status:
  125

Command output:
  (empty)

Command error:
  Unable to find image 'quay.io/biocontainers/multiqc:1.27--pyhdfd78af_0' locally
  docker: Error response from daemon: Get "https://quay.io/v2/": net/http: request canceled while waiting for connection (Client.Timeout exceeded while awaiting headers).
  See 'docker run --help'.

Work dir:
  /home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/c0ddcd2db0a903721258acc5d1602397/work/1e/967a851f34476f6f991370915944e6

Container:
  quay.io/biocontainers/multiqc:1.27--pyhdfd78af_0

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`

 -- Check '/home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/c0ddcd2db0a903721258acc5d1602397/meta/nextflow.log' file for details
Execution cancelled -- Finishing pending tasks before exit
Nextflow stderr:
View more details on GitHub Actions