poster

docs/credits.rst

@@ -10,11 +10,11 @@ Who writes this stuff??
 ==========================================================
 
 SimBA was originally written in the Sam Golden lab at the University of Washington during 2019-2020, by postdoc `Simon Nilsson <https://github.com/sronilsson>`_
-with the help from lab manager `Jia Jie Choong <https://github.com/inoejj>`_. A related plotly dashboard (not maintained as of 2020)
+with the help from lab manager `Jia Jie Choong <https://github.com/inoejj>`_ and PhD student `Nastacia Goodwin <https://github.com/goodwinnastacia>`_. A related plotly dashboard (not maintained as of 2020)
 was also written by `Sophia Hwang <https://github.com/sophihwang26>`_ and `Aasiya Islam <https://github.com/aasiya-islam>`_.
 
 The code written in the Sam Golden lab is no longer maintained or supported by any individuals, documentation, or repository.
-This early code can be a little tricky to work with - as it is not object oriented, and has no unit test and checks etc. - but if needed, the code be found by installing `simba-uw-tf-dev` version prior to `0.77.0` through pypi.
+This early code can be a little tricky to work with - as it is not object oriented, and has no test and checks etc. - but if needed, the code be found by installing `simba-uw-tf-dev` version prior to `0.77.0` through pypi.
 
 `Simon Nilsson <https://github.com/sronilsson>`_ left the Golden lab in 2020 - and since then - he maintains SimBA in his spare time from North Carolina.
 As of October 2020, the SimBA codebase, SimBA Github repository, SimBA pip package, SimBA API, SimBA documentation, and SimBA supports channels, are maintained

docs/docs/workflow.rst

@@ -4,7 +4,7 @@ SimBA presentations and workflow
 Workflow diagram
 ----------------------------------
 .. image:: ../_static/img/simba_workflow.png
-  :width: 2000
+  :width: 1000
   :align: center
 
 Download workflow PDF :download:`pdf <../_static/pdf/SimBA_workflow.pdf>`
@@ -13,7 +13,7 @@ Download workflow PDF :download:`pdf <../_static/pdf/SimBA_workflow.pdf>`
 SimBA Poster
 ----------------------------------
 .. image:: ../_static/img/simba_sam_poster_2.webp
-  :width: 2000
+  :width: 1000
   :align: center
 
 Download poster PDF :download:`pdf <../_static/pdf/simba_poster_sam_2.pdf>`
@@ -22,7 +22,7 @@ Download poster PDF :download:`pdf <../_static/pdf/simba_poster_sam_2.pdf>`
 SimBA explainability slides
 ----------------------------------
 .. image:: ../_static/img/explainability_slide.webp
-  :width: 2000
+  :width: 1000
   :align: center
   :target: https://osf.io/f9ws3/
 

simba/ui/pop_ups/batch_preprocess_pop_up.py

@@ -12,34 +12,31 @@
 
 
 class BatchPreProcessPopUp(PopUpMixin):
+    """
+    :example:
+    >>> BatchPreProcessPopUp()
+    """
+
     def __init__(self):
         super().__init__(title="BATCH PROCESS VIDEO", size=(600, 400))
         selections_frm = CreateLabelFrameWithIcon(parent=self.main_frm, header="SELECTIONS", icon_name=Keys.DOCUMENTATION.value, icon_link=Links.BATCH_PREPROCESS.value,)
-        self.input_folder_select = FolderSelect(selections_frm, "INPUT VIDEO DIRECTORY:", title="Select Folder with Input Videos", lblwidth=20,)
-        self.output_folder_select = FolderSelect(selections_frm, "OUTPUT VIDEO DIRECTORY:", title="Select Folder for Output videos", lblwidth=20)
+        self.input_folder_select = FolderSelect(selections_frm, "INPUT VIDEO DIRECTORY:", title="Select Folder with Input Videos", lblwidth=30,)
+        self.output_folder_select = FolderSelect(selections_frm, "OUTPUT VIDEO DIRECTORY:", title="Select Folder for Output videos", lblwidth=30)
 
         confirm_btn = SimbaButton(parent=selections_frm, txt="CONFIRM", img='tick', txt_clr='blue', font=Formats.FONT_REGULAR.value, cmd=self.run)
         selections_frm.grid(row=0, column=0, sticky=NW)
         self.input_folder_select.grid(row=0, column=0, sticky=NW)
         self.output_folder_select.grid(row=1, column=0, sticky=NW)
         confirm_btn.grid(row=2, column=0, sticky=NW)
+        #self.main_frm.mainloop()
 
     def run(self):
         if not os.path.isdir(self.input_folder_select.folder_path):
             raise NotDirectoryError(msg=f"INPUT folder dir ({self.input_folder_select.folder_path}) is not a valid directory.", source=self.__class__.__name__,)
         if not os.path.isdir(self.output_folder_select.folder_path):
-            raise NotDirectoryError(
-                msg=f"OUTPUT folder dir ({self.output_folder_select.folder_path}) is not a valid directory.",
-                source=self.__class__.__name__,
-            )
-        if (
-            self.output_folder_select.folder_path
-            == self.input_folder_select.folder_path
-        ):
-            raise DuplicationError(
-                msg="The INPUT directory and OUTPUT directory CANNOT be the same folder",
-                source=self.__class__.__name__,
-            )
+            raise NotDirectoryError(msg=f"OUTPUT folder dir ({self.output_folder_select.folder_path}) is not a valid directory.", source=self.__class__.__name__)
+        if (self.output_folder_select.folder_path == self.input_folder_select.folder_path):
+            raise DuplicationError(msg="The INPUT directory and OUTPUT directory CANNOT be the same folder", source=self.__class__.__name__,)
         else:
             batch_preprocessor = BatchProcessFrame(
                 input_dir=self.input_folder_select.folder_path,
@@ -50,3 +47,5 @@ def run(self):
             batch_preprocessor.create_video_rows()
             batch_preprocessor.create_execute_btn()
             batch_preprocessor.main_frm.mainloop()
+
+

simba/ui/pop_ups/outlier_settings_pop_up.py

@@ -107,7 +107,7 @@ def __init__(self, config_path: Union[str, os.PathLike]):
             padx=5,
         )
         self.agg_type_dropdown = DropDownMenu(
-            agg_type_frm, "Aggregation method:", ["mean", "median"], "15"
+            agg_type_frm, "Aggregation method:", ["mean", "median"], "20"
         )
         self.agg_type_dropdown.setChoices("median")
         self.agg_type_dropdown.grid(row=0, column=0, sticky=NW)