Skip to content

Commit 5e3bc17

Browse files
authored
Update nuclprottax values for recent longest ORF recovery change (#1)
1 parent ac1fc17 commit 5e3bc17

File tree

1 file changed

+1
-1
lines changed

1 file changed

+1
-1
lines changed

regression/run_nuclprottax.sh

+1-1
Original file line numberDiff line numberDiff line change
@@ -29,7 +29,7 @@ R_BACTERIA=$(grep 'superkingdom.*Bacteria' "$RESULTS/results_aln_taxreport" | cu
2929
R_VIRUS=$(grep 'superkingdom.*Virus' "$RESULTS/results_aln_taxreport" | cut -f 2)
3030
R_EUKARYOTA=$(grep 'superkingdom.*Eukaryota' "$RESULTS/results_aln_taxreport" | cut -f 2)
3131

32-
TARGET="from filtertaxdb: 1023 181 1265; from taxonomyreport: 1023 181 1265"
32+
TARGET="from filtertaxdb: 2000 207 1950; from taxonomyreport: 2000 207 1950"
3333
ACTUAL="from filtertaxdb: $BACTERIA $VIRUS $EUKARYOTA; from taxonomyreport: $R_BACTERIA $R_VIRUS $R_EUKARYOTA"
3434
awk -v actual="$ACTUAL" -v target="$TARGET" 'BEGIN { print (actual == target) ? "GOOD" : "BAD"; \
3535
print "Expected: ", target; \

0 commit comments

Comments
 (0)