feat: update regression results

Author: leejoey0921

regression/run_cluster.sh

@@ -8,7 +8,7 @@ CLUDB="${RESULTS}/clu"
 
 awk 'BEGIN { l = "" } l != $1 { l = $1; cnt++; } { t++; } END { print cnt"\t"t"\t"(t/cnt) }' "$RESULTS/results_cluster.tsv" > "$RESULTS/results_summary.tsv"
 ACTUAL="$(cut -f1 "$RESULTS/results_summary.tsv")"
-TARGET="15722"
+TARGET="15710"
 awk -v actual="$ACTUAL" -v target="$TARGET" \
     'BEGIN { print (actual == target) ? "GOOD" : "BAD"; print "Expected: ", target; print "Actual: ", actual; }' \
     > "${RESULTS}.report"

regression/run_cluster_update.sh

@@ -17,7 +17,7 @@ CLUSTERMEMEBER=$(wc -l "$RESULTS/clu_updated.tsv" | awk '{print $1}')
 CLUSTER=$(echo $(cut -f1 "$RESULTS/clu_updated.tsv" | sort -u | wc -l))
 UPDATEDSEQCNT=$(wc -l "$RESULTS/seqdb_update.index" | awk '{print $1}')
 
-TARGET="32132 24753 32132"
+TARGET="32132 24742 32132"
 ACTUAL="$CLUSTERMEMEBER $CLUSTER $UPDATEDSEQCNT"
 awk -v actual="$ACTUAL" -v target="$TARGET" 'BEGIN { print (actual == target) ? "GOOD" : "BAD"; \
     print "Expected: ", target; \

regression/run_easy_cluster.sh

@@ -3,7 +3,7 @@
 
 awk 'BEGIN { l = "" } l != $1 { l = $1; cnt++; } { t++; } END { print cnt"\t"t"\t"(t/cnt) }' "$RESULTS/results_cluster.tsv" > "$RESULTS/results_summary.tsv"
 ACTUAL="$(cut -f1 "$RESULTS/results_summary.tsv")"
-TARGET="15722"
+TARGET="15710"
 awk -v actual="$ACTUAL" -v target="$TARGET" \
     'BEGIN { print (actual == target) ? "GOOD" : "BAD"; print "Expected: ", target; print "Actual: ", actual; }' \
     > "${RESULTS}.report"

regression/run_easy_cluster_reassign.sh

@@ -4,7 +4,7 @@ cat  "${DATADIR}/clu.fasta" | "${MMSEQS}" easy-cluster stdin "$RESULTS/results"
 
 awk 'BEGIN { l = "" } l != $1 { l = $1; cnt++; } { t++; } END { print cnt"\t"t"\t"(t/cnt) }' "$RESULTS/results_cluster.tsv" > "$RESULTS/results_summary.tsv"
 ACTUAL="$(cut -f1 "$RESULTS/results_summary.tsv")"
-TARGET="17257"
+TARGET="17248"
 awk -v actual="$ACTUAL" -v target="$TARGET" \
     'BEGIN { print (actual == target) ? "GOOD" : "BAD"; print "Expected: ", target; print "Actual: ", actual; }' \
     > "${RESULTS}.report"

regression/run_easy_linclust.sh

@@ -3,7 +3,7 @@
 
 awk 'BEGIN { l = "" } l != $1 { l = $1; cnt++; } { t++; } END { print cnt"\t"t"\t"(t/cnt) }' "$RESULTS/results_cluster.tsv" > "$RESULTS/results_summary.tsv"
 ACTUAL="$(cut -f1 "$RESULTS/results_summary.tsv")"
-TARGET="26493"
+TARGET="26146"
 awk -v actual="$ACTUAL" -v target="$TARGET" \
     'BEGIN { print (actual == target) ? "GOOD" : "BAD"; print "Expected: ", target; print "Actual: ", actual; }' \
     > "${RESULTS}.report"

regression/run_linclust.sh

@@ -7,7 +7,7 @@ CLUDB=
 
 awk 'BEGIN { l = "" } l != $1 { l = $1; cnt++; } { t++; } END { print cnt"\t"t"\t"(t/cnt) }' "$RESULTS/results_cluster.tsv" > "$RESULTS/results_summary.tsv"
 ACTUAL="$(cut -f1 "$RESULTS/results_summary.tsv")"
-TARGET="26491"
+TARGET="26135"
 awk -v actual="$ACTUAL" -v target="$TARGET" \
     'BEGIN { print (actual == target) ? "GOOD" : "BAD"; print "Expected: ", target; print "Actual: ", actual; }' \
     > "${RESULTS}.report"

regression/run_linclust_split.sh

@@ -6,7 +6,7 @@
 
 awk 'BEGIN { l = "" } l != $1 { l = $1; cnt++; } { t++; } END { print cnt"\t"t"\t"(t/cnt) }' "$RESULTS/results_cluster.tsv" > "$RESULTS/results_summary.tsv"
 ACTUAL="$(cut -f1 "$RESULTS/results_summary.tsv")"
-TARGET="26491"
+TARGET="26135"
 awk -v actual="$ACTUAL" -v target="$TARGET" \
     'BEGIN { print (actual == target) ? "GOOD" : "BAD"; print "Expected: ", target; print "Actual: ", actual; }' \
     > "${RESULTS}.report"