feat: add TC for adjacent=false

Author: leejoey0921

regression/run_linclust_adjacent_disabled.sh

@@ -0,0 +1,13 @@
+#!/bin/sh -e
+CLUDB=
+"${MMSEQS}" createdb "${DATADIR}/clu.fasta" "${RESULTS}/clu"
+
+"${MMSEQS}" linclust "${RESULTS}/clu" "$RESULTS/results_clu" "$RESULTS/tmp" --cov-mode 1 --cluster-mode 0 -c 0.90 --min-seq-id 0.50 --match-adjacent-seq false
+"${MMSEQS}" createtsv "${RESULTS}/clu" "${RESULTS}/clu" "$RESULTS/results_clu" "$RESULTS/results_cluster.tsv"
+
+awk 'BEGIN { l = "" } l != $1 { l = $1; cnt++; } { t++; } END { print cnt"\t"t"\t"(t/cnt) }' "$RESULTS/results_cluster.tsv" > "$RESULTS/results_summary.tsv"
+ACTUAL="$(cut -f1 "$RESULTS/results_summary.tsv")"
+TARGET="26491"
+awk -v actual="$ACTUAL" -v target="$TARGET" \
+    'BEGIN { print (actual == target) ? "GOOD" : "BAD"; print "Expected: ", target; print "Actual: ", actual; }' \
+    > "${RESULTS}.report"

run_regression.sh

@@ -78,6 +78,7 @@ run_test EASY_CLUSTER "run_easy_cluster.sh"
 run_test EASY_NUCL_CLUSTER "run_easy_nuclcluster.sh"
 run_test CLUSTER_REASSIGN "run_easy_cluster_reassign.sh"
 run_test LINCLUST "run_linclust.sh"
+run_test LINCLUST_ADJACENT_DISABLED "run_linclust_adjacent_disabled.sh"
 run_test LINCLUST_SPLIT "run_linclust_split.sh"
 run_test EASY_LINCLUST "run_easy_linclust.sh"
 run_test CLUSTHASH "run_clusthash.sh"