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Code for easily making local version of the phagesDB protein database, but with pham information tagged to ascession lines.

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sophiagosselin/PhagesDB_Databse_Scripts

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PhagesDB_Databse_Scripts

Code for easily making local version of the phagesDB protein database in fasta format, but with pham information tagged to ascession lines. New ascession lines are formated as such: ">Phagename_locus# Cluster Pham# gene_product"

Example: >Bantam_141 DL 10000 product_unkown

Dependencies

-blast/2.11.0
-perl v5 and up

Usage

-perl build_phamdb.pl

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Code for easily making local version of the phagesDB protein database, but with pham information tagged to ascession lines.

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