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1. MannLabs/scPortrait MannLabs/scPortrait Public

   scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images

   Python 38 2

2. MannLabs/py-lmd MannLabs/py-lmd Public

   Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and convert single-cell segmentation masks.

   Python 8 1

3. MannLabs/SPARCSpy MannLabs/SPARCSpy Public

   Jupyter Notebook 10 6

4. MannLabs/SPARCStools MannLabs/SPARCStools Public

   python tools to perform data parsing and image stitching on microscopy data

   Jupyter Notebook 5 2

5. MannLabs/SPARCS_pub_figures MannLabs/SPARCS_pub_figures Public

   Notebook and data to recreate figures from SPARCS manuscript

   Jupyter Notebook 2