This collection of HyPhy, Python, and JavaScript (d3) scripts is a working version of a pipeline to process Immunoglobulins B-cell transcript sequences. It is adapted from our genetic algorithm for HIV-1 subtyping - SCUEAL, hence the name
For optimal performance, IgSCUEAL should be run using the MPI version of HyPhy on a cluster.
See the wiki for (some) documentation, and usage examples.