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refactor: update stats/base/dists/triangular/mgf implementation and test tolerances #4768

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anandkaranubc
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Resolves #4704

Description

What is the purpose of this pull request?

This pull request:

  • updates the implementation of the triangular MGF in main.c, main.js, and factory.js to align with the latest Julia standards. It also updates test tolerances in test.native.js for consistency.
  • update fixtures for triangular MGF based on Julia implementation (using the same Julia version 1.5)

Related Issues

Does this pull request have any related issues?

This pull request:

Questions

Any questions for reviewers of this pull request?

  • There is a helper function called phi2 which has been added to the C and JS files. I have added it as a private helper function in the same files. Should it be moved to a separate module for JS and a separate C file?

Other

Any other information relevant to this pull request? This may include screenshots, references, and/or implementation notes.

  • The PR reduces the tolerance thresholds for test.native.js from a factor of 1.0e7 to 4.0. The required tolerance should be 1.0, but only 2 test cases fail with a 1.0 factor tolerance. I tried investigating the root cause by changing the order of terms and avoiding operator fusion, but no changes were observed. I will need some advice on how to fix this.

Checklist

Please ensure the following tasks are completed before submitting this pull request.


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@stdlib-bot stdlib-bot added the Needs Review A pull request which needs code review. label Jan 15, 2025
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stdlib-bot commented Jan 15, 2025

Coverage Report

Package Statements Branches Functions Lines
stats/base/dists/triangular/mgf $\color{green}380/380$
$\color{green}+100.00\%$
$\color{green}38/38$
$\color{green}+100.00\%$
$\color{green}5/5$
$\color{green}+100.00\%$
$\color{green}380/380$
$\color{green}+100.00\%$

The above coverage report was generated for the changes in this PR.

@anandkaranubc anandkaranubc marked this pull request as draft January 15, 2025 18:26
@stdlib-bot stdlib-bot removed the Needs Review A pull request which needs code review. label Jan 15, 2025
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@anandkaranubc anandkaranubc force-pushed the fix/triangular-mgf-divergence branch from 3225361 to 263cdaf Compare January 15, 2025 21:12
@stdlib-bot stdlib-bot added the Statistics Issue or pull request related to statistical functionality. label Jan 15, 2025
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@anandkaranubc anandkaranubc marked this pull request as ready for review January 15, 2025 21:20
@stdlib-bot stdlib-bot added the Needs Review A pull request which needs code review. label Jan 15, 2025
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anandkaranubc commented Jan 15, 2025

Hii @kgryte,

Over to you for review. A follow up question in addition to the ones above:

  • To ensure 100% coverage, should I update runner.jl to include examples from all 4 cases, or should I just manually add additional test cases in a new tape function?

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kgryte commented Jan 16, 2025

@anandkaranubc Would you mind updating and rerunning the runner?

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…ntation

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Can I get some feedback on this too please, @kgryte? Thanks!

@kgryte kgryte changed the title feat: update stats/base/dists/triangular/mgf implementation and test tolerances for Julia alignment refactor: update stats/base/dists/triangular/mgf implementation and test tolerances Jan 18, 2025
@kgryte kgryte added Needs Changes Pull request which needs changes before being merged. and removed Needs Review A pull request which needs code review. labels Jan 18, 2025
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…nd use uniform instead of randu

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anandkaranubc commented Jan 22, 2025

Should the README.md also be changed with the updated formula for mgf calculation?

$$M_X(t) := \mathbb{E}\!\left[e^{tX}\right] = \begin{cases} \exp(ct) \frac{(c-a)\phi_2((a-c)t) + (b-c)\phi_2((b-c)t)}{b-a} & \text{if } a < c < b \\\ \exp(ct) \phi_2((a-c)t) & \text{if } a = c < b \\\ \exp(ct) \phi_2((b-c)t) & \text{if } a < c = b \\\ \exp(ct) & \text{if } a = c = b \end{cases}$$ $$\phi_2(x) := \begin{cases} 1, & \text{if } x = 0 \\\ \frac{2 \left( \exp(x) - 1 - x \right)}{x^2} & \text{if } x \neq 0 \end{cases}$$

I notice that this would also mean changing the svg link provided for the equation.

A side note: The Julia implementation does this case by case breakdown to avoid unnecessary computation.

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kgryte commented Jan 22, 2025

Should the README.md also be changed with the updated formula for mgf calculation?

No. The equations in READMEs should not necessarily reflect implementation logic. That is an implementation detail. Unless the package explicitly concerns a particular algorithm, the README contains equations as you'd find in a textbook or Wikipedia. The MGF currently in the README follows the latter.

anandkaranubc and others added 2 commits March 1, 2025 11:04
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@anandkaranubc anandkaranubc added Needs Review A pull request which needs code review. and removed Needs Changes Pull request which needs changes before being merged. labels Mar 1, 2025
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anandkaranubc commented Mar 1, 2025

Once #5638 gets merged, the code coverage will be 100%.

Edit: That PR has been merged and the code coverage is 100% now!

// FIXME: the tolerance for the C implementation is widely different from the JavaScript implementation, and it is not clear why.
tol = 1.0e7 * EPS * abs( expected[ i ] );
// NOTE: the tolerance here is larger than for the JavaScript implementation due to compiler optimizations which may be performed resulting in result divergence. For discussion, see https://github.com/stdlib-js/stdlib/pull/2298#discussion_r1624765205
tol = 2.0 * EPS * abs( expected[ i ] );
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I can confirm that if CFLAGS="-ffp-contract=off" is used, the tolerance can be set to 1.0 here.

@anandkaranubc anandkaranubc requested a review from kgryte March 1, 2025 19:26
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/stdlib merge

@stdlib-bot stdlib-bot added the bot: In Progress Pull request is currently awaiting automation. label Mar 1, 2025
@stdlib-bot stdlib-bot removed the bot: In Progress Pull request is currently awaiting automation. label Mar 1, 2025
Signed-off-by: Philipp Burckhardt <[email protected]>
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Let's get this one in! 🚀

@Planeshifter Planeshifter added the Ready To Merge A pull request which is ready to be merged. label Mar 6, 2025
@stdlib-bot stdlib-bot removed the Needs Review A pull request which needs code review. label Mar 6, 2025
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stdlib-bot commented Mar 6, 2025

PR Commit Message

refactor: update `stats/base/dists/triangular/mgf` implementation and test tolerances

PR-URL: https://github.com/stdlib-js/stdlib/pull/4768
Ref: https://github.com/stdlib-js/stdlib/issues/4704

Co-authored-by: Philipp Burckhardt <[email protected]>
Co-authored-by: stdlib-bot <[email protected]>
Reviewed-by: Philipp Burckhardt <[email protected]>
Reviewed-by: Athan Reines <[email protected]>
Signed-off-by: Philipp Burckhardt <[email protected]>

Please review the above commit message and make any necessary adjustments.

@Planeshifter Planeshifter merged commit dd3acfd into stdlib-js:develop Mar 6, 2025
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@anandkaranubc anandkaranubc deleted the fix/triangular-mgf-divergence branch March 6, 2025 03:33
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