Set gap-costs back to 10 and 1

steineggerlab · Jul 30, 2022 · 8b3b56e · 8b3b56e
1 parent 8ba3ea5
commit 8b3b56e
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/src/workflow/EasyStructureSearch.cpp b/src/workflow/EasyStructureSearch.cpp
@@ -16,8 +16,8 @@ void setEasyStructureSearchDefaults(Parameters *p) {
     p->maskProb = 0.99995;
     p->sensitivity = 9.5;
     p->maxResListLen = 1000;
-    p->gapOpen = 7;
-    p->gapExtend = 2;
+    p->gapOpen = 10;
+    p->gapExtend = 1;
     p->alignmentMode = Parameters::ALIGNMENT_MODE_SCORE_COV_SEQID;
     p->removeTmpFiles = true;
 }

diff --git a/src/workflow/StructureSearch.cpp b/src/workflow/StructureSearch.cpp
@@ -15,8 +15,8 @@ void setStructureSearchWorkflowDefaults(LocalParameters *p) {
     p->maskProb = 0.99995;
     p->sensitivity = 9.5;
     p->maxResListLen = 1000;
-    p->gapOpen = 7;
-    p->gapExtend = 2;
+    p->gapOpen = 10;
+    p->gapExtend = 1;
     p->alignmentMode = Parameters::ALIGNMENT_MODE_SCORE_COV_SEQID;
     p->removeTmpFiles = true;
 }