Automated update fixed versions of entries

sys-bio · Dec 31, 2024 · 88f104c · 88f104c
1 parent 6e14f29
commit 88f104c
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Showing 5 changed files with 770 additions and 1,230 deletions.
diff --git a/final/BIOMD0000000696/BIOMD0000000696-matlab.m b/final/BIOMD0000000696/BIOMD0000000696-matlab.m
@@ -231,9 +231,9 @@ function main()
 
 	xdot=zeros(11,1);
 	% rateRule: variable = sum_abs_dx8
-	xdot(10) = abs(rateOf(x(8)));
+	xdot(10) = abs(x(8));
 	% rateRule: variable = P_theta
-	xdot(11) = abs(rateOf(x(6)));
+	xdot(11) = abs(x(6));
 
 % Species:   id = x1, name = x1, affected by kineticLaw
 	xdot(1) = (1/(compartment_Cell))*(( 1.0 * reaction_r001___mA_transcription) + (-1.0 * reaction_r002___A_translation) + ( 1.0 * reaction_r002___A_translation) + (-1.0 * reaction_r003___mA_degradation));

diff --git a/final/BIOMD0000000696/BIOMD0000000696-octave.m b/final/BIOMD0000000696/BIOMD0000000696-octave.m
@@ -231,9 +231,9 @@ function main()
 
 	xdot=zeros(11,1);
 	% rateRule: variable = sum_abs_dx8
-	xdot(10) = abs(rateOf(x(8)));
+	xdot(10) = abs(x(8));
 	% rateRule: variable = P_theta
-	xdot(11) = abs(rateOf(x(6)));
+	xdot(11) = abs(x(6));
 
 % Species:   id = x1, name = x1, affected by kineticLaw
 	xdot(1) = (1/(compartment_Cell))*(( 1.0 * reaction_r001___mA_transcription) + (-1.0 * reaction_r002___A_translation) + ( 1.0 * reaction_r002___A_translation) + (-1.0 * reaction_r003___mA_degradation));

diff --git a/final/BIOMD0000000696/BIOMD0000000696.ode b/final/BIOMD0000000696/BIOMD0000000696.ode
@@ -20,8 +20,6 @@ ceil(x)=flr(1+x)
 @delay=50
 
 
-# FunctionDefinition id = rateOf
-# Inconsistent mathML operators in Function Definition, function ignored
 # FunctionDefinition id = Constant_flux__irreversible, name = Constant flux (irreversible)
 Constant_(v)=(v)
 
@@ -197,11 +195,11 @@ aux K_cells=K_cells
 
 # rateRule: variable = sum_abs_dx8
 init sum_abs_d=0.0
-dsum_abs_d/dt=abs(rateOf(x8))
+dsum_abs_d/dt=abs(x8)
 
 # rateRule: variable = P_theta
 init P_theta=0.0
-dP_theta/dt=abs(rateOf(x6))
+dP_theta/dt=abs(x6)
 
 # Reaction: id = r001___mA_transcription, name = r001 - mA_transcription