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Add new metrics#17

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chelseabright96 wants to merge 70 commits intoprocessingtheislab/archmap_data:processingfrom processing_minify_scanvitheislab/archmap_data:processing_minify_scanviCopy head branch name to clipboard

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Commits on Apr 16, 2024

• retrain classifiers

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  ed6cdad

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• Merge branch 'processing' into processing_minify_scanvi

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Commits on Apr 19, 2024

• add ratio and add all query obs to result

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• Merge branch 'processing' of github.com:theislab/archmap_data into processing

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Commits on Apr 20, 2024

• change webhook

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• fix webhook call

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  942e213

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• change to inner join

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• add webhook

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Commits on Apr 21, 2024

• move call to backend

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• fix error

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Commits on May 9, 2024

• add presence score and other metrics

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• make max epochs standard

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• revert renaming

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Commits on May 11, 2024

• uncomment notify backend

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• uncomment notify backend

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Commits on May 12, 2024

• notify backend metrics

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• Merge branch 'processing_minify_scanvi' of github.com:theislab/archmap_data into processing

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Commits on May 14, 2024

• add webhook for metrics

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• add webhook_metrics parameter

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• round metrics

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• Merge branch 'processing_minify_scanvi' of github.com:theislab/archmap_data into processing

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Commits on May 16, 2024

• fix spoli classifier error

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Commits on May 18, 2024

• add stress score

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Commits on May 21, 2024

• change stress score

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Commits on May 23, 2024

• fix cluster pres score

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Commits on Jun 1, 2024

• add distributed training to scvi models and use speed improvement branch scpoli

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Commits on Jun 2, 2024

• change number of devices

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• change to absolute path

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• Merge branch 'distributed_training' of github.com:theislab/archmap_data into distributed_training

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• change number of devices

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Commits on Jun 3, 2024

• add X back for cxg

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Commits on Jun 4, 2024

• remove threading

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• update get keys function

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• Merge branch 'distributed_training' into processing

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  832ecaa

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• remove hardcoding of get_keys

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  fd0a356

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• fix unknown key issue

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Commits on Jun 6, 2024

• change lr fetal brain

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• uncomment

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Commits on Jun 9, 2024

• increase lr for fetal brain

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Commits on Jun 17, 2024

• speed up metric calculations

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• change max_epochs for fetal brain

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Commits on Jun 18, 2024

• fix output error

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• move notify backend metrics

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Commits on Jun 19, 2024

• fix bug percent unknown

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Commits on Jun 20, 2024

• increase fetal brain epochs

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• add cell_type_key_list

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  aeab4e4

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• fix bug

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  c0b40f7

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• fix bug

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Commits on Jun 21, 2024

• add cell type key

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• fix duplicate bug

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Commits on Jun 22, 2024

• add scanvi pred to ref

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• add classifiers for cell type list

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Commits on Jun 25, 2024

• add multi label classification and pretrain uncert

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• print model id

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  79e6027

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• fix bug

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• fix bug

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• uncomment

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Commits on Jun 27, 2024

• change batch key

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• fix batch column

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• fix batch key issue

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• add hnoca extended name

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Commits on Jun 28, 2024

• Merge branch 'pretrain' into processing

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• change cell type key hnoca extended

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Commits on Jul 1, 2024

• fix cell type key bug

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  80206d0

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• fix bug

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  205e6e0

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• fix batch error

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• fix hnoca issue

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Commits on Jul 4, 2024

• downsample pbmc for download

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Commits on Jul 15, 2024

• add finer cell types hlca

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• add ann_level_5

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