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36 Open 24 Closed
36 Open 24 Closed
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Issues list

enable dataset size check in cfp.datasets enhancement New feature or request
#167 opened Mar 7, 2025 by MUCDK
@LeonStadelmann
building docs we cannot include cfp.pp because of cuml bug Something isn't working
#161 opened Mar 5, 2025 by MUCDK
suppress inherited attributes and methods from docs , e.g. flax and scVI, which we don't need. bug Something isn't working
#149 opened Feb 24, 2025 by MUCDK
possibly pin jax to < 0.5.0 bug Something isn't working
#148 opened Feb 13, 2025 by MUCDK
Update to ott-jax 0.4.10 once released enhancement New feature or request
#137 opened Nov 26, 2024 by MUCDK
AttributeError: 'tuple' object has no attribute 'divergence' bug Something isn't working
#133 opened Nov 6, 2024 by lorenzo-consoli
@lorenzo-consoli
Output of predict bug Something isn't working
#129 opened Nov 1, 2024 by MUCDK
@joschif
2
get_condition_embedding error when rep_dict is empty bug Something isn't working
#122 opened Oct 18, 2024 by dbobrovskiy
@dbobrovskiy
condition_id_key also in DataManager enhancement New feature or request
#120 opened Oct 2, 2024 by MUCDK
Improve docs in scvi external + more tests. As of now, only focused on making VAE work with normal likelihood enhancement New feature or request
#119 opened Oct 1, 2024 by MUCDK
correct type in docs + say what happens when None
#111 opened Sep 11, 2024 by MUCDK
sample_rep not correctly passed in predict bug Something isn't working
#110 opened Sep 11, 2024 by MUCDK
centered_pca result cannot be saved in h5ad enhancement New feature or request
#108 opened Sep 9, 2024 by MUCDK
2
improve docs in centered_pca enhancement New feature or request
#107 opened Sep 9, 2024 by MUCDK
fixing dependencies bug Something isn't working
#104 opened Aug 29, 2024 by joschif
@joschif
joyplot enhancement New feature or request
#102 opened Aug 29, 2024 by MUCDK
@MUCDK
adaptation to callbacks enhancement New feature or request
#101 opened Aug 29, 2024 by MUCDK
save predictions to adata, and add multiple push-forwards for GENOT, provide downstream functionality for uncertainties enhancement New feature or request
#92 opened Aug 27, 2024 by MUCDK
@MUCDK
write tests for unconditional data enhancement New feature or request
#90 opened Aug 27, 2024 by MUCDK
remove to_boolean in prepare enhancement New feature or request
#89 opened Aug 27, 2024 by MUCDK
do not reset logs when continuing training. enhancement New feature or request
#88 opened Aug 23, 2024 by MUCDK
@zimea @MUCDK
2
Implementation of cfp.pp.get_gene_embedding_from_esm enhancement New feature or request
#87 opened Aug 23, 2024 by MUCDK
4 tasks
@guillaumehu
1
Only compute val predictions whenever we have a callback. enhancement New feature or request
#85 opened Aug 23, 2024 by MUCDK
@MUCDK
make samplers compatible with unconditional data enhancement New feature or request
#74 opened Aug 19, 2024 by MUCDK
@MUCDK
check whether we can remove self._covar_to_idx in DataManager enhancement New feature or request
#63 opened Aug 12, 2024 by MUCDK
@MUCDK
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