Add testload argument to basiliskRun

Related to #136
theislab · Mar 9, 2025 · 3d892f5 · 3d892f5
1 parent 1f2175d
commit 3d892f5
Show file tree

Hide file tree

Showing 4 changed files with 7 additions and 2 deletions.
diff --git a/NEWS.md b/NEWS.md
@@ -2,6 +2,10 @@
 
 * Bioconductor 3.21, May 2025
 
+## zellkonverter 1.17.1
+
+* Add `testload` argument to `basiliskRun()` calls (Partial fix for #139)
+
 ## zellkonverter 1.17.0 (2024-10-30)
 
 * Bioconductor 3.21 devel

diff --git a/R/read.R b/R/read.R
@@ -71,6 +71,7 @@ readH5AD <- function(file, X_name = NULL, use_hdf5 = FALSE,
         sce <- basiliskRun(
             env = env,
             fun = .H5ADreader,
+            testload = "anndata",
             file = file,
             X_name = X_name,
             backed = use_hdf5,

diff --git a/R/write.R b/R/write.R
@@ -101,6 +101,7 @@ writeH5AD <- function(sce, file, X_name = NULL, skip_assays = FALSE,
     basiliskRun(
         env = env,
         fun = .H5ADwriter,
+        testload = "anndata",
         sce = sce,
         file = file,
         X_name = X_name,

diff --git a/man/AnnData-Conversion.Rd b/man/AnnData-Conversion.Rd