Skip to content

update actions #1

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 3 commits into
base: master
Choose a base branch
from
Open

update actions #1

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
fe73ca6
update actions
stemangiola Jun 5, 2023
bc1a2fe
Merge branch 'master' into update-checks
stemangiola Jun 5, 2023
6eb3ee7
update README
stemangiola Jun 5, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 5 additions & 5 deletions .github/workflows/basic_checks.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ env:
jobs:
r-build-and-check:
runs-on: ubuntu-latest
container: bioconductor/bioconductor_docker:RELEASE_3_15
container: bioconductor/bioconductor_docker:RELEASE_3_16
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
steps:
Expand All @@ -17,10 +17,10 @@ jobs:
- name: Query dependencies and update old packages
run: |
# We'll install the specific versions from the install instructions
BiocManager::install("stemangiola/[email protected].4")
BiocManager::install("stemangiola/[email protected].1")
BiocManager::install("stemangiola/[email protected].1")
BiocManager::install("stemangiola/[email protected].2")
BiocManager::install("stemangiola/[email protected].10")
BiocManager::install("stemangiola/[email protected].4")
BiocManager::install("stemangiola/[email protected].3")
BiocManager::install("stemangiola/[email protected].6")

# Then install the other dependencies in the usual way
BiocManager::install(ask=FALSE)
Expand Down
9 changes: 5 additions & 4 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -29,10 +29,11 @@ If you want to install the packages and material post-workshop, the instructions
Sys.setenv("R_REMOTES_NO_ERRORS_FROM_WARNINGS" = "true")

# Install same versions used in the workshop
BiocManager::install("stemangiola/[email protected]")
BiocManager::install("stemangiola/[email protected]")
BiocManager::install("stemangiola/[email protected]")
BiocManager::install("stemangiola/[email protected]")

BiocManager::install("stemangiola/[email protected]")
BiocManager::install("stemangiola/[email protected]")
BiocManager::install("stemangiola/[email protected]")
BiocManager::install("stemangiola/[email protected]")

# Install workshop package

Expand Down