Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
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Feb 4, 2025 - Rust
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pangenome-graph
Here are 18 public repositories matching this topic...
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
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Jan 23, 2025 - Python
Practical Haplotype Graph (PHG) version 2
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Feb 5, 2025 - Kotlin
strange cross-platform, performance-oriented and interactive pangenome and large graph visualization
visualization scalability indexing graph-visualization external-memory interactive-visualization pangenome coarsening large-graph gfa-format pangenome-graph
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Jan 31, 2025 - C
Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
distance distance-measures variation-graph distance-calculation pangenomics pangenome graph-distance variation-graphs pangenome-graph
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Jan 20, 2025 - Rust
Repository for the FantasticLamp pipeline
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Oct 2, 2024 - Python
Analysis of shared parts of a pangenome
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Jul 12, 2024 - Python
Notes upon pangenome graphs construction
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Oct 17, 2024 - TypeScript
ODGI: understanding pangenome graphs (https://doi.org/10.1093/bioinformatics/btac308)
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Apr 27, 2022 - TeX
Alignment of Pangenome Graphs with Ricci Flow
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Sep 12, 2024 - Jupyter Notebook
Library to parse, edit and handle in memory GFA graphs
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Nov 22, 2024 - Python
rust pangenome graph analyze
bioinformatics genome-analysis pangenome-graph pangenome-analysis genome-analysis-annotation pangenome-alignment pangenome-graphs
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Jan 15, 2025 - Rust
rust pangenome graph bed
bioinformatics genome-analysis pangenome pangenome-inference pangenome-graph genome-analysis-annotation
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Jan 15, 2025 - Rust
Leveraging WES short reads for PAN-EXOME creation and analysis.
ngs exome-pipeline exome ngs-analysis exome-sequencing ngs-pipeline pangenome pangenomic-analysis pangenome-pipeline pangenome-graph
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Nov 6, 2024 - WDL
Scripts for de-novo genome assembly, assembly polishing, QC and post-assemble analyses of HiFi whole genome sequence data and downstream pangenomics analyses to identify structural variants
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Jun 17, 2024 - Shell
rust pangenome bedtools intersect
bioinformatics bioinformatics-data genome-sequencing bedtools genome-analysis pangenome bedtoolsintersect pangenome-graph
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Jan 15, 2025 - Rust
rust pangenome graph asm
bioinformatics pangenome graphs-algorithms pangenome-graph genome-analysis-annotation bioinformatics-pangenome-graphs
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Jan 17, 2025 - Rust
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