Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
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Sep 1, 2025 - Python
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raw-reads
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A Bioinformatics pipeline to process Raw reads to VCF files in Bash
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Jun 26, 2024 - Shell
This project contains a pipeline to analyze raw ancient data, obtained from the sequencing facility. The pipeline includes various Snakemake workflows to process, analyze, and generate reports on the sequence quality, which helps decide if an aDNA extraction and sequencing was successful, and further polishes the data for downstream analyses.
bioinformatics snakemake pipeline genomics genome bioinformatics-pipeline multiqc fasta bam fastq adna dna-sequencing genome-mapping ancientdna ancient-dna short-reads raw-reads ancient-dna-analysis short-read-mapping
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Feb 25, 2026 - Python
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