VSEARCH 1.1.1: Added info about --log and --quiet options to help text

torognes · Feb 20, 2015 · dc47964 · dc47964
1 parent 5bdba2f
commit dc47964
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Showing 4 changed files with 8 additions and 3 deletions.
diff --git a/doc/vsearch.1 b/doc/vsearch.1
@@ -1582,6 +1582,9 @@ various architectures.
 Added the \-\-quiet option to suppress all output to stdout and stdout
 except for warnings and fatal errors.
 Added the \-\-log option to write messages to a log file.
+.TP
+.BR v1.1.1\~ "released February 20th, 2015"
+Added info about \-\-log and \-\-quiet options to help text.
 .LP
 .\" ============================================================================
 .\" TODO:

diff --git a/doc/vsearch_manual.pdf b/doc/vsearch_manual.pdf
diff --git a/src/vsearch.cc b/src/vsearch.cc
@@ -1337,13 +1337,15 @@ void cmd_help()
       fprintf(stdout, 
               "\n"
               "General options\n"
-              "  --help                      display help information\n"
-              "  --version                   display version information\n"
               "  --fasta_width INT           width of FASTA seq lines, 0 for no wrap (80)\n"
+              "  --help                      display help information\n"
+              "  --log FILENAME              write messages, timing and memory info to file\n"
               "  --maxseqlength INT          maximum sequence length (50000)\n"
               "  --minseqlength INT          min seq length (clust/derep/search: 32, other:1)\n"
               "  --notrunclabels             do not truncate labels at first space\n"
+              "  --quiet                     output just warnings and fatal errors to stderr\n"
               "  --threads INT               number of threads to use, zero for all cores (0)\n"
+              "  --version                   display version information\n"
               "\n"
               "Alignment options (most searching options also apply)\n"
               "  --allpairs_global FILENAME  perform global alignment of all sequence pairs\n"

diff --git a/src/vsearch.h b/src/vsearch.h
@@ -85,7 +85,7 @@
 #include "allpairs.h"
 
 #define PROG_NAME "vsearch"
-#define PROG_VERSION "v1.1.0"
+#define PROG_VERSION "v1.1.1"
 
 #ifdef __APPLE__
 #define PROG_ARCH "osx_x86_64"