Updates for component NoahMP land model

CMakeLists.txt

@@ -16,7 +16,7 @@ list(APPEND CMAKE_MODULE_PATH ${CMAKE_SOURCE_DIR}/CMakeModules/Modules)
 ###############################################################################
 
 # Valid applications and choices
-list(APPEND VALID_APPS ATM ATMAERO ATMAQ ATMW ATMWM ATML ATMF LND LND-LM4 S2S S2SA S2SW S2SWA S2SWAL ATM_DS2S ATM_DS2S-PCICE HAFS HAFSW HAFS-MOM6 HAFS-MOM6W HAFS-ALL NG-GODAS)
+list(APPEND VALID_APPS ATM ATMAERO ATMAQ ATMW ATMWM ATML ATMF LND LND-LM4 S2S S2SL S2SA S2SW S2SWA S2SWL S2SWAL ATM_DS2S ATM_DS2S-PCICE HAFS HAFSW HAFS-MOM6 HAFS-MOM6W HAFS-ALL NG-GODAS)
 set(APP NONE CACHE BOOL "Application Name")
 if(NOT (APP IN_LIST VALID_APPS))
   message(FATAL_ERROR "${APP} is not a valid application.\nValid Applications are: ${VALID_APPS}")
@@ -157,7 +157,7 @@ if(FMS)
   find_package(FMS 2022.04 REQUIRED COMPONENTS R4 R8)
   if(APP MATCHES "^(HAFSW)$")
     add_library(fms ALIAS FMS::fms_r4)
-  elseif (APP MATCHES "^(S2S|S2SA|S2SW|S2SWA|S2SWAL|ATM_DS2S|ATM_DS2S-PCICE|NG-GODAS|HAFS-MOM6|HAFS-MOM6W)$")
+  elseif (APP MATCHES "^(S2S|S2SA|S2SL|S2SW|S2SWL|S2SWA|S2SWAL|ATM_DS2S|ATM_DS2S-PCICE|NG-GODAS|HAFS-MOM6|HAFS-MOM6W)$")
     add_library(fms ALIAS FMS::fms_r8)
   endif()
   if(APP MATCHES "^(ATM|ATMAERO|ATMAQ|ATMWM|ATMW|ATML|ATMF|ATML-LM4|LND-LM4|HAFS|HAFS-ALL)$")

cmake/configure_apps.cmake

@@ -52,7 +52,7 @@ if(APP MATCHES "^(NG-GODAS)$")
   message("Configuring UFS app in (CDEPS) Data Atmosphere mode")
 endif()
 
-if(APP MATCHES "^(S2S|S2SA|S2SW|S2SWA|S2SWAL)$")
+if(APP MATCHES "^(S2S|S2SL|S2SA|S2SW|S2SWL|S2SWA|S2SWAL)$")
   set(APP_MSG "Configuring UFS app in S2S")
   set(CMEPS      ON  CACHE BOOL "Enable CMEPS"               FORCE)
   set(FMS        ON  CACHE BOOL "Enable FMS"                 FORCE)
@@ -61,15 +61,15 @@ if(APP MATCHES "^(S2S|S2SA|S2SW|S2SWA|S2SWAL)$")
   set(CICE6      ON  CACHE BOOL "Enable CICE6"               FORCE)
   set(CDEPS      ON  CACHE BOOL "Enable CDEPS"               FORCE)
   set(STOCH_PHYS ON  CACHE BOOL "Enable Stochastic Physics"  FORCE)
-  if(APP MATCHES "^(S2SW|S2SWA|S2SWAL)")
+  if(APP MATCHES "^(S2SW|S2SWL|S2SWA|S2SWAL)")
     set(WW3      ON  CACHE BOOL "Enable WAVEWATCH III"       FORCE)
     string(CONCAT APP_MSG ${APP_MSG} " with Waves")
   endif()
   if(APP MATCHES "^(S2SA|S2SWA|S2SWAL)")
     set(UFS_GOCART ON  CACHE BOOL "Enable GOCART"            FORCE)
     string(CONCAT APP_MSG ${APP_MSG} " with Aerosols")
   endif()
-  if(APP MATCHES "^S2SWAL")
+  if(APP MATCHES "^(S2SL|S2SWL|S2SWAL)")
     set(NOAHMP     ON  CACHE BOOL "Enable NOAHMP"            FORCE)
   endif()
   message("${APP_MSG} mode")

tests/bl_date.conf

@@ -1 +1 @@
-export BL_DATE=20250107
+export BL_DATE=20250122

tests/fv3_conf/control_run.IN

@@ -93,11 +93,7 @@ else
 fi
 
 if [ $TILEDFIX = .true. ]; then
-    if [ $CPLLND == .true. ]; then
-        cp    @[INPUTDATA_ROOT]/FV3_fix_tiled/@[ATMRES]/@[ATMRES]*.nc INPUT/.
-    else
-        cp    @[INPUTDATA_ROOT]/FV3_fix_tiled/@[ATMRES]/@[ATMRES]*.nc .
-    fi
+    cp    @[INPUTDATA_ROOT]/FV3_fix_tiled/@[ATMRES]/@[ATMRES]*.nc .
     cp    @[INPUTDATA_ROOT]/FV3_fix/global_glacier.2x2.grb .
     cp    @[INPUTDATA_ROOT]/FV3_fix/global_maxice.2x2.grb .
     cp    @[INPUTDATA_ROOT]/FV3_fix/RTGSST.1982.2012.monthly.clim.grb .

tests/fv3_conf/noahmp_run.IN

@@ -1,64 +1,161 @@
 mkdir -p INPUT RESTART
 
-if [ "$LNDRES" = "C96" ]; then
+if [ "$ATMRES" = "C96" ]; then
   inputdir=FV3_input_data
-elif [ "$LNDRES" = "C48" ]; then
-  inputdir=FV3_input_data48
-elif [ "$LNDRES" = "C192" ]; then
-  inputdir=FV3_input_data192
-elif [ "$LNDRES" = "C384" ]; then
-  inputdir=FV3_input_data384
-elif [ "$LNDRES" = "C768" ]; then
-  inputdir=FV3_input_data768
+else
+  inputdir=FV3_input_data${ATMRES#C}
 fi
-echo "inputdir=$inputdir,LNDRES=$LNDRES"
+echo "inputdir=$inputdir,ATMRES=$ATMRES"
+
+V2_SFC_FILE=${V2_SFC_FILE:-false}
+SUFFIX=${RT_SUFFIX}
 
-if [ $DATM_CDEPS == true ]; then
+if [[ $DATM_CDEPS == true ]] || [[  $S2S = false ]]; then
   targetdir="./INPUT"
-  rsync -arv @[INPUTDATA_ROOT]/NOAHMP_IC/$atm_datamode/ufs-land_@[LNDRES]_init_fields.tile1.nc ./${targetdir}/@[LNDRES].initial.tile1.nc
-  rsync -arv @[INPUTDATA_ROOT]/NOAHMP_IC/$atm_datamode/ufs-land_@[LNDRES]_init_fields.tile2.nc ./${targetdir}/@[LNDRES].initial.tile2.nc
-  rsync -arv @[INPUTDATA_ROOT]/NOAHMP_IC/$atm_datamode/ufs-land_@[LNDRES]_init_fields.tile3.nc ./${targetdir}/@[LNDRES].initial.tile3.nc
-  rsync -arv @[INPUTDATA_ROOT]/NOAHMP_IC/$atm_datamode/ufs-land_@[LNDRES]_init_fields.tile4.nc ./${targetdir}/@[LNDRES].initial.tile4.nc
-  rsync -arv @[INPUTDATA_ROOT]/NOAHMP_IC/$atm_datamode/ufs-land_@[LNDRES]_init_fields.tile5.nc ./${targetdir}/@[LNDRES].initial.tile5.nc
-  rsync -arv @[INPUTDATA_ROOT]/NOAHMP_IC/$atm_datamode/ufs-land_@[LNDRES]_init_fields.tile6.nc ./${targetdir}/@[LNDRES].initial.tile6.nc
-else
-  if [ "$ATMRES" = "$LNDRES" ]; then
-    targetdir="./INPUT"
-    cd ${targetdir}
-    ln -sf grid_spec.nc @[LNDRES]_mosaic.nc
-    cd -
-  else
-    mkdir -p INPUT/$LNDRES
-    targetdir="./INPUT/$LNDRES"
-  fi
 
-  if [ $WARM_START = .false. ]; then
-    cp -r @[INPUTDATA_ROOT]/${inputdir}/INPUT_L127/sfc_data.tile*.nc ${targetdir}/.
+  if [ $DATM_CDEPS == true ]; then
+    # Initial condition
+    rsync -arv @[INPUTDATA_ROOT]/NOAHMP_IC/$atm_datamode/ufs-land_@[LNDRES]_init_fields.tile1.nc ./${targetdir}/@[LNDRES].initial.tile1.nc
+    rsync -arv @[INPUTDATA_ROOT]/NOAHMP_IC/$atm_datamode/ufs-land_@[LNDRES]_init_fields.tile2.nc ./${targetdir}/@[LNDRES].initial.tile2.nc
+    rsync -arv @[INPUTDATA_ROOT]/NOAHMP_IC/$atm_datamode/ufs-land_@[LNDRES]_init_fields.tile3.nc ./${targetdir}/@[LNDRES].initial.tile3.nc
+    rsync -arv @[INPUTDATA_ROOT]/NOAHMP_IC/$atm_datamode/ufs-land_@[LNDRES]_init_fields.tile4.nc ./${targetdir}/@[LNDRES].initial.tile4.nc
+    rsync -arv @[INPUTDATA_ROOT]/NOAHMP_IC/$atm_datamode/ufs-land_@[LNDRES]_init_fields.tile5.nc ./${targetdir}/@[LNDRES].initial.tile5.nc
+    rsync -arv @[INPUTDATA_ROOT]/NOAHMP_IC/$atm_datamode/ufs-land_@[LNDRES]_init_fields.tile6.nc ./${targetdir}/@[LNDRES].initial.tile6.nc
+
+    # Fixed files
+    cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx@[OCNRES].tile1.nc ${targetdir}/oro_data.tile1.nc
+    cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx@[OCNRES].tile2.nc ${targetdir}/oro_data.tile2.nc
+    cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx@[OCNRES].tile3.nc ${targetdir}/oro_data.tile3.nc
+    cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx@[OCNRES].tile4.nc ${targetdir}/oro_data.tile4.nc
+    cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx@[OCNRES].tile5.nc ${targetdir}/oro_data.tile5.nc
+    cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx@[OCNRES].tile6.nc ${targetdir}/oro_data.tile6.nc
+    cp @[INPUTDATA_ROOT]/${inputdir}/INPUT_L127_gfsv17/oro_data_ls* ${targetdir}/.
+    cp @[INPUTDATA_ROOT]/${inputdir}/INPUT_L127_gfsv17/oro_data_ss* ${targetdir}/.
+    cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/@[LNDRES]*.nc ${targetdir}/.
+    cp @[INPUTDATA_ROOT]/CPL_FIX/a@[LNDRES]o@[OCNRES]/grid_spec.nc ${targetdir}/.
+    cp @[INPUTDATA_ROOT]/${inputdir}/INPUT/@[LNDRES]_grid*.nc ${targetdir}/.
+    cp @[INPUTDATA_ROOT]/${inputdir}/INPUT/grid_spec.nc ${targetdir}/@[LNDRES]_mosaic.nc
   else
-    # land restart file
-    cp ../${DEP_RUN}${SUFFIX}/ufs.cpld.lnd.out.${RESTART_FILE_SUFFIX_SECS}.tile*.nc RESTART/.
-    # CMEPS restart and pointer files
-    RFILE=ufs.cpld.cpl.r.${RESTART_FILE_SUFFIX_SECS}.nc
-    cp  ../${DEP_RUN}${SUFFIX}/RESTART/${RFILE} .
-    ls -1 ${RFILE}>rpointer.cpl
-    # link grid spec file
+    # Initial condition
+    if [ $WARM_START = .false. ]; then
+      # IC
+      if [ "$V2_SFC_FILE" = "true" ]; then
+        cp -r @[INPUTDATA_ROOT]/${inputdir}/INPUT_L127_mx${OCNRES}_v2_sfc/sfc_data*.nc ${targetdir}/.
+        cp -r @[INPUTDATA_ROOT]/${inputdir}/INPUT_L127_mx${OCNRES}_v2_sfc/gfs_data*.nc ${targetdir}/.
+        cp -r @[INPUTDATA_ROOT]/${inputdir}/INPUT_L127_mx${OCNRES}_v2_sfc/gfs_ctrl.nc ${targetdir}/.
+      else
+        cp -r @[INPUTDATA_ROOT]/${inputdir}/INPUT_L127_mx${OCNRES}/sfc_data*.nc ${targetdir}/.
+        cp -r @[INPUTDATA_ROOT]/${inputdir}/INPUT_L127_mx${OCNRES}/gfs_data*.nc ${targetdir}/.
+        cp -r @[INPUTDATA_ROOT]/${inputdir}/INPUT_L127_mx${OCNRES}/gfs_ctrl*.nc ${targetdir}/.
+      fi
+    else
+      # FV3 related restart files
+      cp -r ../${DEP_RUN}${SUFFIX}/${targetdir}/* ${targetdir}/.
+      cp -r ../${DEP_RUN}${SUFFIX}/RESTART/${RESTART_FILE_PREFIX}.* ${targetdir}/.
+      for RFILE in INPUT/${RESTART_FILE_PREFIX}.*; do
+        [ -e $RFILE ] || exit 1
+        RFILE_OLD=$(basename $RFILE)
+           mv -f $RFILE ${targetdir}/"${RFILE_OLD//${RESTART_FILE_PREFIX}./}"
+      done
+      if [[ $IAU_OFFSET == 6 ]] && [[ $FHROT -le 6 ]]; then
+        cp @[INPUTDATA_ROOT]/${inputdir}/INPUT_L127_mx${OCNRES}/fv_increment*.nc INPUT/.
+      fi
+    fi
+
+    # Fixed files
+    FNSMCC="global_soilmgldas.statsgo.t1534.3072.1536.grb"
+    FNMSKH="global_slmask.t1534.3072.1536.grb"
+    cp @[INPUTDATA_ROOT]/${inputdir}/${FNSMCC} .
+    cp @[INPUTDATA_ROOT]/${inputdir}/${FNMSKH} .
+    if [ $TILEDFIX = .true. ]; then
+      cp @[INPUTDATA_ROOT]/FV3_fix/global_glacier.2x2.grb .
+      cp @[INPUTDATA_ROOT]/FV3_fix/global_maxice.2x2.grb .
+      cp @[INPUTDATA_ROOT]/FV3_fix/RTGSST.1982.2012.monthly.clim.grb .
+      cp @[INPUTDATA_ROOT]/FV3_fix/global_snoclim.1.875.grb .
+      cp @[INPUTDATA_ROOT]/FV3_fix/IMS-NIC.blended.ice.monthly.clim.grb .
+    fi
+
+    cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[ATMRES]/oro_@[ATMRES].mx@[OCNRES].tile1.nc ${targetdir}/oro_data.tile1.nc
+    cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[ATMRES]/oro_@[ATMRES].mx@[OCNRES].tile2.nc ${targetdir}/oro_data.tile2.nc
+    cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[ATMRES]/oro_@[ATMRES].mx@[OCNRES].tile3.nc ${targetdir}/oro_data.tile3.nc
+    cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[ATMRES]/oro_@[ATMRES].mx@[OCNRES].tile4.nc ${targetdir}/oro_data.tile4.nc
+    cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[ATMRES]/oro_@[ATMRES].mx@[OCNRES].tile5.nc ${targetdir}/oro_data.tile5.nc
+    cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[ATMRES]/oro_@[ATMRES].mx@[OCNRES].tile6.nc ${targetdir}/oro_data.tile6.nc
+    cp @[INPUTDATA_ROOT]/${inputdir}/INPUT_L127_gfsv17/oro_data_ls* ${targetdir}/.
+    cp @[INPUTDATA_ROOT]/${inputdir}/INPUT_L127_gfsv17/oro_data_ss* ${targetdir}/.
+    cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[ATMRES]/@[ATMRES]*.nc .
+    cp @[INPUTDATA_ROOT]/CPL_FIX/a@[ATMRES]o@[OCNRES]/grid_spec.nc ${targetdir}/.
+    cp @[INPUTDATA_ROOT]/${inputdir}/INPUT/@[ATMRES]_grid*.nc ${targetdir}/.
+    cp @[INPUTDATA_ROOT]/${inputdir}/INPUT/grid_spec.nc ${targetdir}/@[ATMRES]_mosaic.nc
+    cp @[INPUTDATA_ROOT]/MOM6_FIX/@[OCNRES]/ocean_mosaic.nc ${targetdir}/.
+
+    # Merra2
+    if [ $IAER = 1011 ]; then
+      for n in 01 02 03 04 05 06 07 08 09 10 11 12; do
+        cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2_y14_24/merra2_1423_${n}.nc aeroclim.m${n}.nc
+      done
+      cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/aer_data/LUTS/optics_BC.v1_3.dat  optics_BC.dat
+      cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/aer_data/LUTS/optics_OC.v1_3.dat  optics_OC.dat
+      cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/aer_data/LUTS/optics_DU.v15_3.dat optics_DU.dat
+      cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/aer_data/LUTS/optics_SS.v3_3.dat  optics_SS.dat
+      cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/aer_data/LUTS/optics_SU.v1_3.dat  optics_SU.dat
+    fi
+
+    cp @[INPUTDATA_ROOT]/FV3_input_data/ugwp_c384_tau.nc ./ugwp_limb_tau.nc
+
+    if [ $IMP_PHYSICS = 8 ]; then
+      cp @[INPUTDATA_ROOT]/FV3_fix/CCN_ACTIVATE.BIN CCN_ACTIVATE.BIN
+      cp @[INPUTDATA_ROOT]/FV3_fix/freezeH2O.dat freezeH2O.dat
+      cp @[INPUTDATA_ROOT]/FV3_fix/qr_acr_qgV2.dat qr_acr_qgV2.dat
+      cp @[INPUTDATA_ROOT]/FV3_fix/qr_acr_qsV2.dat qr_acr_qsV2.dat
+    fi
+
+    # Prognostic aerosols
+    if [ $CPLCHM = .true. ]; then
+      ln -sf  @[INPUTDATA_ROOT]/GOCART/p8c_5d/ExtData .
+    fi
   fi
 fi
 
+# Land component related restart files
+if [ $WARM_START = .true. ]; then
+  # Copy land restart files
+  cp ../${DEP_RUN}${SUFFIX}/ufs.cpld.lnd.out.${RESTART_FILE_SUFFIX_SECS}.tile*.nc RESTART/.
+  # CMEPS restart and pointer files
+  RFILE=ufs.cpld.cpl.r.${RESTART_FILE_SUFFIX_SECS}.nc
+  cp  ../${DEP_RUN}${SUFFIX}/RESTART/${RFILE} .
+  ls -1 ${RFILE}>rpointer.cpl
+fi
+
+# Running land in different resolution
+# Note that CMEPS mediator has some limitiations to run land in different resolution than atmosphere
 if [ "$ATMRES" != "$LNDRES" ]; then
-  rsync -arv @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/@[LNDRES].maximum_snow_albedo.tile*.nc ${targetdir}/.
-  rsync -arv @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/@[LNDRES].slope_type.tile*.nc ${targetdir}/.
-  rsync -arv @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/@[LNDRES].soil_type.tile*.nc ${targetdir}/.
-  rsync -arv @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/@[LNDRES].soil_color.tile*.nc ${targetdir}/.
-  rsync -arv @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/@[LNDRES].substrate_temperature.tile*.nc ${targetdir}/.
-  rsync -arv @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/@[LNDRES].vegetation_greenness.tile*.nc ${targetdir}/.
-  rsync -arv @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/@[LNDRES].vegetation_type.tile*.nc ${targetdir}/.
-  rsync -arv @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx*.tile1.nc ${targetdir}/oro_data.tile1.nc
-  rsync -arv @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx*.tile2.nc ${targetdir}/oro_data.tile2.nc
-  rsync -arv @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx*.tile3.nc ${targetdir}/oro_data.tile3.nc
-  rsync -arv @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx*.tile4.nc ${targetdir}/oro_data.tile4.nc
-  rsync -arv @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx*.tile5.nc ${targetdir}/oro_data.tile5.nc
-  rsync -arv @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx*.tile6.nc ${targetdir}/oro_data.tile6.nc
-  rsync -arv @[INPUTDATA_ROOT]/${inputdir}/INPUT/@[LNDRES]_grid.tile*.nc ${targetdir}/.
-  rsync -arv @[INPUTDATA_ROOT]/${inputdir}/INPUT/grid_spec.nc ${targetdir}/@[LNDRES]_mosaic.nc
+  mkdir -p INPUT/$LNDRES
+  targetdir="./INPUT/$LNDRES"
+  cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/@[LNDRES].maximum_snow_albedo.tile*.nc ${targetdir}/.
+  cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/@[LNDRES].slope_type.tile*.nc ${targetdir}/.
+  cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/@[LNDRES].soil_type.tile*.nc ${targetdir}/.
+  cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/@[LNDRES].soil_color.tile*.nc ${targetdir}/.
+  cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/@[LNDRES].substrate_temperature.tile*.nc ${targetdir}/.
+  cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/@[LNDRES].vegetation_greenness.tile*.nc ${targetdir}/.
+  cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/@[LNDRES].vegetation_type.tile*.nc ${targetdir}/.
+  cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx025.tile1.nc ${targetdir}/oro_data.tile1.nc
+  cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx025.tile2.nc ${targetdir}/oro_data.tile2.nc
+  cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx025.tile3.nc ${targetdir}/oro_data.tile3.nc
+  cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx025.tile4.nc ${targetdir}/oro_data.tile4.nc
+  cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx025.tile5.nc ${targetdir}/oro_data.tile5.nc
+  cp @[INPUTDATA_ROOT]/FV3_fix_tiled/@[LNDRES]/oro_@[LNDRES].mx025.tile6.nc ${targetdir}/oro_data.tile6.nc
+  cp @[INPUTDATA_ROOT]/FV3_input_data${LNDRES#C}/INPUT/@[LNDRES]_grid.tile*.nc ${targetdir}/.
+  cp @[INPUTDATA_ROOT]/FV3_input_data${LNDRES#C}/INPUT/grid_spec.nc ${targetdir}/@[LNDRES]_mosaic.nc
+  if [ $WARM_START = .false. ]; then
+    if [ "$V2_SFC_FILE" = "true" ]; then
+      cp @[INPUTDATA_ROOT]/FV3_input_data${LNDRES#C}/INPUT_L127_mx025_v2_sfc/sfc_data*.nc ${targetdir}/.
+      cp @[INPUTDATA_ROOT]/FV3_input_data${LNDRES#C}/INPUT_L127_mx025_v2_sfc/gfs_data*.nc ${targetdir}/.
+      cp @[INPUTDATA_ROOT]/FV3_input_data${LNDRES#C}/INPUT_L127_mx025_v2_sfc/gfs_ctrl*.nc ${targetdir}/.
+    else
+      cp @[INPUTDATA_ROOT]/FV3_input_data${LNDRES#C}/INPUT_L127_mx025/sfc_data*.nc ${targetdir}/.
+      cp @[INPUTDATA_ROOT]/FV3_input_data${LNDRES#C}/INPUT_L127_mx025/gfs_data*.nc ${targetdir}/.
+      cp @[INPUTDATA_ROOT]/FV3_input_data${LNDRES#C}/INPUT_L127_mx025/gfs_ctrl*.nc ${targetdir}/.
+    fi
+  fi
 fi