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recommented analyse peaks
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@knutdrand
knutdrand committed Mar 23, 2018
1 parent 715a164 commit 77db287
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2 changes: 1 addition & 1 deletion tests/mhc_test_data/run_mhc_benchmarking.sh
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Expand Up @@ -12,7 +12,7 @@ fimo -oc fimo_macs_sequences MA0139.1.meme macs_sequences_mhc.fasta
# Motif enrichment
graph_peak_caller plot_motif_enrichment test_sequences.fasta macs_sequences_mhc.fasta MA0139.1.meme plot.png True CTCF

graph_peak_caller analyse_peaks graph.obg haplo1kg50-mhc.json macs_sequences_mhc.fasta test_sequences.fasta fimo_test_sequences/fimo.txt fimo_macs_sequences_mhc/fimo.txt chr6 28510119 33480577
# graph_peak_caller analyse_peaks -g graph.nobg haplo1kg50-mhc.json macs_sequences_mhc.fasta test_sequences.fasta fimo_test_sequences/fimo.txt fimo_macs_sequences_mhc/fimo.txt chr6 28510119 33480577


#ls plot.png

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