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Improving path registry#66

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Jgmedina95 merged 16 commits intomainur-whitelab/MDCrow:mainfrom improvingPathRegistryur-whitelab/MDCrow:improvingPathRegistryCopy head branch name to clipboardJan 10, 2024

+2,244-66

Commits

Commits on Dec 21, 2023

• adding path registry utils and change in get pdb

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Commits on Jan 3, 2024

• Change Clean tools to use path_registry

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• a) correct bug in modifyscripttool llm attribute, b) modify changepdb tool to directly map pdb file into path registry with file id in new directory

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• Delete debuggin print statements

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• Debugging path registry utils in clean tools

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• added path registry to make simulation tool

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• added TODO in path registry

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• added path registry file id to modify script tool

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Commits on Jan 4, 2024

• merging main into branch

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• Merge branch 'main' into improvingPathRegistry

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• added new name for modified simulations in write_file_name of path registry. b) improved the descriptions of the query for the modify script tool, and c) include the modified script into the path r…

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• add a TODO in setup and run

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• add descriptions of files when invoking ListRegistryPaths with new util function

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• add descriptions of files when invoking ListRegistryPaths with new util function

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Commits on Jan 5, 2024

• Delete .vscode/settings.json

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Commits on Jan 9, 2024

• added tests to writefilename and map path

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