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Issues list

Get CAMI Benchmarks into Galaxy
#39 opened Feb 20, 2025 by paulzierep
7 tasks
@SantaMcCloud
Update semibin DB
#37 opened Feb 18, 2025 by paulzierep
1 task
1
Merge Binette and DAS Tool bins per sample T1.3
#36 opened Feb 18, 2025 by paulzierep
3 tasks
1
Add checkm2 to workflow T1.3
#35 opened Feb 18, 2025 by paulzierep
3 tasks
3
Add group assembly / binning workflow T1.1
#31 opened Feb 10, 2025 by paulzierep
1 task
@paulzierep @Minamehr
Generate ML features with Galaxy T3.1
#30 opened Jan 16, 2025 by paulzierep
4 tasks
2
Validate the main workflow T1.3
#29 opened Jan 16, 2025 by paulzierep
2 tasks
Publish Benchmark Workflow T1.3
#28 opened Jan 16, 2025 by paulzierep
2 tasks
Finalize the CAMI Binning Benchmark Workflow T1.3
#27 opened Jan 16, 2025 by paulzierep
4 of 7 tasks
@SantaMcCloud
20
Add minimal test data T1.2
#26 opened Jan 16, 2025 by paulzierep
1 task
Check IWC requirements T1.2
#25 opened Jan 16, 2025 by paulzierep
1 task
M3.1: Prototype and metadata of Galaxy workflow
Create workflow feature table and prioritize features T1.1
#24 opened Jan 15, 2025 by paulzierep M3.1: Prototype and metadata of Galaxy workflow
1
Add genome annotation to workflow T1.1
#23 opened Jan 15, 2025 by paulzierep
2 tasks
M3.1: Prototype and metadata of Galaxy workflow
4
Add taxonomic classification to workflow T1.1
#22 opened Jan 15, 2025 by paulzierep
1 of 3 tasks
M3.1: Prototype and metadata of Galaxy workflow
@paulzierep @SantaMcCloud
D3.6: Abstract for a talk at a conference submitted Deliverable
#21 opened Jan 15, 2025 by paulzierep
D3.5: Blogpost summarising the hackathon outcomes Deliverable
#20 opened Jan 15, 2025 by paulzierep
D3.4: Machine-Learning model registered on DOME registry and implemented to predict needed computational resources of metagenomic assembly tools for given input data and rules integrated into Galaxy Total Perspective Vortex (TPV) Deliverable
#19 opened Jan 15, 2025 by paulzierep
D3.3: Tutorial hosted on the Galaxy Training Network and visible on ELIXIR’ TeSS Deliverable
#18 opened Jan 15, 2025 by paulzierep
D3.2 Assessed MAGs and their quality for the 3 selected real-world datasets Deliverable
#17 opened Jan 15, 2025 by paulzierep
T4.3: Submit to present the work at a relevant scientific conference (M28-M30) T4.3
#16 opened Jan 15, 2025 by paulzierep
T4.2: Write a manuscript for a peer-reviewed journal (M15-M30) T4.2
#15 opened Jan 15, 2025 by paulzierep
T4.1: Organise and conduct hackathon in Freiburg (M15-M22)
#14 opened Jan 15, 2025 by paulzierep
7 tasks
@bebatut @dadrasarmin @paulzierep
3
T3.4: Integrate the resource allocation tool and rules for resource allocation in Galaxy using Galaxy Total Perspective Vortex (TPV) (M27-M28) T3.4
#13 opened Jan 15, 2025 by paulzierep
T3.3: Implement a tool for using this model to predict computational resources required for executing the workflow on different input datasets (M23-M27)
#12 opened Jan 15, 2025 by paulzierep
T3.2: Build a Machine-learning model to predict the needed computational resources for the assembly based on the k-mer profile (M19-M22)
#11 opened Jan 15, 2025 by paulzierep
ProTip! Exclude everything labeled bug with -label:bug.