docker-cellxgene

Docker image with CELLxGENE version 1.3.0.

This container is optimized for CELLxGENE usage in galaxy.

To build this container you can use the following command:

docker build -t CONTAINER_NAME .
docker run --rm -it -p 5005:5005 -v PATH/TO/DATA/CONTAINING/DIRECTORY:/data CONTAINER_NAME cellxgene launch /data/FILE.h5ad --host 0.0.0.0 --port 5005

The container is stored on Quay.io and you can get it via:

docker pull quay.io/bgruening/cellxgene:1.3.0-1