docker-cellxgene-vip

Docker image with cellxgene and the VIP plugins.

To build this container you can use the following command:

docker build -t CONTAINER_NAME .
docker run --rm -it -p 5005:5005 -v PATH/TO/DATA/CONTAINING/DIRECTORY:/data CONTAINER_NAME cellxgene launch /data/FILE.h5ad --host 0.0.0.0 --port 5005

The container is stored on Quay.io and you can get it via:

docker pull quay.io/bgruening/cellxgene-vip:3.1.2

The original Dockerfile is from Benedikt Obermayer (bobermayer).