Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
yala authored Nov 13, 2021
1 parent ab51edf commit 70413de
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ The package requirements can be install with pip:

`pip install -r requirements.txt`

If you are familiar with docker, you can also directly leverage the OncoServe [docker container](https://www.dropbox.com/s/8nlyb5q8ppfh085/oncoserve_mirai.0.4.0.tar?dl=0) which has all the depedencies preinstalled and the trained Mirai model (see below).
If you are familiar with docker, you can also directly leverage the OncoServe [Mirai docker container](https://www.dropbox.com/s/8nlyb5q8ppfh085/oncoserve_mirai.0.4.0.tar?dl=0) which has all the depedencies preinstalled and the trained Mirai model (see below).

## Preprocessing
Our code-base operates on PNG images. We converted presentation view dicoms to PNG16 files using the DCMTK library. We used the dcmj2pnm program (v3.6.1, 2015) with +on2 and–min-max-window flags. To this, you can use DCMTK directly or [OncoData](https://github.com/yala/OncoData_Public), our python wrapper for converting dicoms.
Expand Down

0 comments on commit 70413de

Please sign in to comment.