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multiple outputfiles after bamtofastq for same library

Status: Open.

#198 In 10XGenomics/bamtofastq;

· TolgaDuz opened on Jan 28, 2025

Sort paired end .bam before run bamtofastq?

Status: Open.

#185 In 10XGenomics/bamtofastq;

· Alvis-Jiang opened on Apr 20, 2024

Strange read-splitting behaviour

Status: Open.

#184 In 10XGenomics/bamtofastq;

· apredeus opened on Mar 11, 2024

Option --relaxed not working properly for bamtofastq-1.4.1

Status: Open.

#151 In 10XGenomics/bamtofastq;

· JurMich opened on Jun 21, 2023

Release 1.4.2/1.5.0

Status: Open.

#136 In 10XGenomics/bamtofastq;

· martin-g opened on Apr 18, 2023

bamtofastq generated 3 reads with triplicate of each reads

Status: Open.

#134 In 10XGenomics/bamtofastq;

· Davidwei7 opened on Apr 9, 2023

Make the tool work with "cellranger vdj" bam outputs

Status: Open.

#108 In 10XGenomics/bamtofastq;

· sralchemab opened on Nov 16, 2022

bamtofastqerror: Not a valid read pair: false, false

Status: Open.

#103 In 10XGenomics/bamtofastq;

· MingwuDuan opened on Sep 30, 2022

Is there a way to skip the error and continue converting?

Status: Open.

#100 In 10XGenomics/bamtofastq;

· wangyiqing50 opened on Sep 21, 2022

bamtofastq depends on bxindex, which is part of Long Ranger

Status: Open.

#99 In 10XGenomics/bamtofastq;

· slowkow opened on Sep 9, 2022

How to set sample name of fastq file output

Status: Open.

#97 In 10XGenomics/bamtofastq;

· Yijia-Jiang opened on Sep 2, 2022

Directly turn bam file to UMI count?

Status: Open.

#75 In 10XGenomics/bamtofastq;

· WT215 opened on May 5, 2022