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@Lexogen-Tools

Lexogen

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  1. idemux idemux Public

    Idemux is a command line tool designed to demultiplex paired-end fastq files from QuantSeq-Pool.

    Python 8 1

  2. idemuxcpp idemuxcpp Public

    iDemux is an all-in-one command line tool that can be used for both demultiplexing and error correction of FASTQ files. It enables demultiplexing of i1 inline barcodes of Lexogen’s QuantSeq-Pool as…

    C++ 7 1

  3. SIRVsuite SIRVsuite Public

    SIRVsuite is a command line tool to QC an RNA-Seq workflow using Lexogen's SIRV spike-in controls.

    Python 9 5

  4. quantseqpool_analysis quantseqpool_analysis Public

    Standard analysis routine for samples that were generated with Lexogen's QuantSeq pool library preparation kit.

    Shell 9 3

Repositories

Showing 10 of 10 repositories
  • corall_analysis Public

    Standard analysis routine for samples generated with Corall and Corall v2 library preparation kit.

    Lexogen-Tools/corall_analysis’s past year of commit activity
    Shell 6 0 2 0 Updated Feb 6, 2025
  • SIRVsuite Public

    SIRVsuite is a command line tool to QC an RNA-Seq workflow using Lexogen's SIRV spike-in controls.

    Lexogen-Tools/SIRVsuite’s past year of commit activity
    Python 9 5 2 0 Updated Feb 5, 2025
  • idemuxcpp Public

    iDemux is an all-in-one command line tool that can be used for both demultiplexing and error correction of FASTQ files. It enables demultiplexing of i1 inline barcodes of Lexogen’s QuantSeq-Pool as well as demultiplexing of i7 and/or i5 indices of any other RNA-Seq library prep. iDemux can also be used for superior error correction of RNA-Seq li…

    Lexogen-Tools/idemuxcpp’s past year of commit activity
    C++ 7 1 0 0 Updated Nov 14, 2024
  • Fastq-Read-ID-Converter Public
    Lexogen-Tools/Fastq-Read-ID-Converter’s past year of commit activity
    Python 0 0 0 0 Updated May 3, 2024
  • pyranges Public Forked from pyranges/pyranges

    Performant Pythonic GenomicRanges

    Lexogen-Tools/pyranges’s past year of commit activity
    Python 0 MIT 48 0 0 Updated Oct 11, 2023
  • bamread Public Forked from pyranges/bamread

    Bam to Pandas DataFrame, quickly

    Lexogen-Tools/bamread’s past year of commit activity
    Cython 0 6 0 0 Updated Oct 11, 2023
  • quantseqpool_analysis Public

    Standard analysis routine for samples that were generated with Lexogen's QuantSeq pool library preparation kit.

    Lexogen-Tools/quantseqpool_analysis’s past year of commit activity
    Shell 9 3 1 0 Updated Oct 31, 2022
  • idemux Public

    Idemux is a command line tool designed to demultiplex paired-end fastq files from QuantSeq-Pool.

    Lexogen-Tools/idemux’s past year of commit activity
    Python 8 1 2 0 Updated May 4, 2022
  • ARTIC_SARS-CoV-2 Public

    Supplementary information for the Lexogen SARS-CoV2 ARTIC primer panel

    Lexogen-Tools/ARTIC_SARS-CoV-2’s past year of commit activity
    Shell 1 1 0 0 Updated Jul 8, 2021
  • sars-cov-2_analysis Public

    An analysis script routine to assess if samples that were prepared with Lexogen's barcoded targeted QuantSeq Flex library preparation contain copies of the SARS-CoV-2 virus.

    Lexogen-Tools/sars-cov-2_analysis’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 22, 2020

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