Patch 2.3.1 #114

hkaspersen · 2024-02-07T11:42:34Z

Update to version 2.3.1, involved the following:

Updated the version of ParSNP to 2.0.3, as of issue Update ParSNP to version 2.0.0 #112
Updated Panaroo to version 1.3.4
Bumped software versions in all reports
Added gffs as optional output with the command --output_gffs, as of issue Add gff files as optional output in core gene track #113
Fixed CI test disk space issue

hkaspersen added 12 commits February 7, 2024 11:06

updated version of parsnp

7d35d4d

bumped tool versions in reports

cef4159

updated version of alppaca in config

066620b

updated version of checkout

3641e5b

added optional output of gff files, as of issue #113

35a5d60

updated the conda version of parsnp

7f0407b

added option for optional output of gffs, as of issue #113

06dca06

added updates

28a5466

bumped version of panaroo

7bdc0aa

added to changelog

de7a917

added free dosk space job

ce95ec1

corrected job testing

2aa830e

This was linked to issues Feb 7, 2024

Update ParSNP to version 2.0.0 #112

Closed

Add gff files as optional output in core gene track #113

Closed

hkaspersen merged commit a46f5ac into master Feb 7, 2024
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