Removing taxonomy information from rnc_accessions

.github/workflows/main.yaml

@@ -7,7 +7,8 @@ name: Building Pipeline Containers
 on:
  push:
   branches:
-   'dev'
+   - 'dev'
+   - 'python-update'
 jobs:
 
   starting-notification:
@@ -34,10 +35,10 @@ jobs:
         run: docker login -u $DOCKER_USER -p $DOCKER_PASSWORD
 
       - name: docker build
-        run: docker build -f Dockerfile -t rnacentral/rnacentral-import-pipeline .
+        run: docker build -f Dockerfile -t rnacentral/rnacentral-import-pipeline:experimental .
 
       - name: docker push
-        run: docker push rnacentral/rnacentral-import-pipeline
+        run: docker push rnacentral/rnacentral-import-pipeline:experimental
 
   finished-notification:
     needs:
@@ -53,23 +54,23 @@ jobs:
           SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
           MSG_MINIMAL: true
 
-  singularity-conversion:
-    needs:
-      - create-docker-image
-    uses: rnacentral/rnacentral-import-pipeline/.github/workflows/singularity.yaml@dev
-    secrets: inherit
+  # singularity-conversion:
+  #   needs:
+  #     - create-docker-image
+  #   uses: rnacentral/rnacentral-import-pipeline/.github/workflows/singularity.yaml@dev
+  #   secrets: inherit
 
 
-  finished-singularity:
-    needs:
-      - singularity-conversion
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v2
+  # finished-singularity:
+  #   needs:
+  #     - singularity-conversion
+  #   runs-on: ubuntu-latest
+  #   steps:
+  #     - uses: actions/checkout@v2
 
-      - name: Finished notification
-        uses: rtCamp/action-slack-notify@v2
-        env:
-          SLACK_MESSAGE: 'New singularity image pushed to ghcr'
-          SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
-          MSG_MINIMAL: true
+  #     - name: Finished notification
+  #       uses: rtCamp/action-slack-notify@v2
+  #       env:
+  #         SLACK_MESSAGE: 'New singularity image pushed to ghcr'
+  #         SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
+  #         MSG_MINIMAL: true

.github/workflows/version-tag.yaml

@@ -0,0 +1,23 @@
+# This workflow will create a version tag when a pull request is merged into main
+# It only fires if the commit message starts Release:
+name: Automatic version tagging
+
+on:
+  pull_request:
+    types:
+      - closed
+    branches:
+      - main
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - name: Bump version and push tag
+        id: tag_version
+        uses: mathieudutour/[email protected]
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          default_bump: false
+          tag_prefix: release_
+          custom_release_rules: Release:major