Version 0.5.0

What's Changed

• Parameter Tuning Code Integration: update evaluation and add EGFR gold standard by @ntalluri in #193
• Update Snakemake HTCondor Executor instructions with additional troubleshooting by @jhiemstrawisc in #213
• Downgrade RTD python version to 3.11 to fix build error by @jhiemstrawisc in #215
• Fix Snakemake DAG.sanitize_local_storage_copies by @agitter in #217
• Update summary.py to include parameter combinations by @cgsze in #194
• docs: leave note on configuring the correct environment by @tristan-f-r in #224
• docs(contributing): mention 'can't index property' err by @tristan-f-r in #222
• fix: friendly logging by @tristan-f-r in #220
• refactor: cleanup prm by @tristan-f-r in #270
• style: yamlfmt by @tristan-f-r in #239
• refactor(dataset): drop unused edge_table parameter by @tristan-f-r in #263
• refactor(contributing): clean up local_neighborhood by @tristan-f-r in #229
• fix: tighten & relax yaml parsing constraints by @tristan-f-r in #228
• Finish algorithm similarity eval by @ntalluri in #248
• Delete EGFR parameter tuning config by @ntalluri in #294
• Adding Go to environment.yml file by @ntalluri in #305
• Add RWR algorithm by @tristan-f-r in #261
• Add BTB algorithm by @tristan-f-r in #250
• Add direction support on APSP by @tristan-f-r in #223
• fix(singularity): mv unpacked files by @tristan-f-r in #283
• feat: allow multiple env variables by @tristan-f-r in #273
• fix: supply correct OI1 flag by @tristan-f-r in #308
• chore: drop GraphSpace by @tristan-f-r in #265
• fix: multithreading error by @tristan-f-r in #293
• Bump to version 0.5.0 by @agitter in #319

New Contributors

• @cgsze made their first contribution in #194
• @tristan-f-r made their first contribution in #224

Full Changelog: 0.4.1...0.5.0

Version 0.4.1

What's Changed

• summarize_networks InvalidIndexError by @ntalluri in #191
• Set up Read The Docs (RTD) Scaffolding and Sketch Docs Website by @jhiemstrawisc in #202

Full Changelog: 0.4.0...0.4.1

Version 0.4.0

What's Changed

• Test Docker login by @agitter in #203
• Integrate dsub by @jhiemstrawisc in #195

Full Changelog: 0.3.0...0.4.0

Version 0.3.0

What's Changed

• Contributing guide updates from summer 2024 by @agitter in #179
• Evaluation Implementation by @ntalluri in #170
• Enable spras in CHTC with new executor and profile by @jhiemstrawisc in #172
• Added test to check robustness of PCA representation by @ntalluri in #185
• Omics Integrator 2 Testing Error by @ntalluri in #182
• Decouple Ensembling by @ntalluri in #175
• Enable long Snakemake workflows in HTCondor by @jhiemstrawisc in #183
• Update MEO Node ID Error by @ntalluri in #190
• Dummy node logic by @sumedhars in #187
• Fix Singularity-based tests by @agitter in #201
• Add auto container release action by @jhiemstrawisc in #200
• Container workflow overhaul by @jhiemstrawisc in #198

New Contributors

• @sumedhars made their first contribution in #187

Full Changelog: 0.2.0...0.3.0

Version 0.2.0

What's Changed

• Adding Header Lines by @ntalluri in #142
• Add Dataset Label Checking by @ntalluri in #169
• Modify GHA Docker build tests to clean up after themselves by @jhiemstrawisc in #177

Full Changelog: 0.1.0...0.2.0

Version 0.1.0

Initial SPRAS release