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Remove ACAD10 #740

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merged 2 commits into from
Dec 8, 2023
Merged

Remove ACAD10 #740

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8dc0d19
fix: remove ACAD10 from YAML file
Devlin-Moyer Dec 5, 2023
f190474
fix: remove ACAD10 from model/genes.tsv
Devlin-Moyer Dec 5, 2023
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7 changes: 2 additions & 5 deletions model/Human-GEM.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -70608,7 +70608,7 @@
- MAM02774m: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000111271 or ENSG00000117054 or ENSG00000122971 or ENSG00000151498 or ENSG00000177646 or ENSG00000196177 or ENSG00000240303"
- gene_reaction_rule: "ENSG00000117054 or ENSG00000122971 or ENSG00000151498 or ENSG00000177646 or ENSG00000196177 or ENSG00000240303"
- rxnNotes: ""
- rxnFrom: "HMRdatabase"
- eccodes: "1.3.99.3;1.3.8.7"
Expand Down Expand Up @@ -70986,7 +70986,7 @@
- MAM01803m: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000111271 or ENSG00000117054 or ENSG00000122971 or ENSG00000151498 or ENSG00000177646 or ENSG00000196177 or ENSG00000240303"
- gene_reaction_rule: "ENSG00000117054 or ENSG00000122971 or ENSG00000151498 or ENSG00000177646 or ENSG00000196177 or ENSG00000240303"
- rxnNotes: ""
- rxnFrom: "HMRdatabase"
- eccodes: "1.3.99.3"
Expand Down Expand Up @@ -307463,9 +307463,6 @@
- !!omap
- id: "ENSG00000111261"
- name: "MANSC1"
- !!omap
- id: "ENSG00000111271"
- name: "ACAD10"
- !!omap
- id: "ENSG00000111275"
- name: "ALDH2"
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1 change: 0 additions & 1 deletion model/genes.tsv
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Expand Up @@ -737,7 +737,6 @@ genes geneENSTID geneENSPID geneUniProtID geneSymbols geneEntrezID geneNames gen
"ENSG00000111224" "ENST00000416739;ENST00000427057;ENST00000458162;ENST00000228820;ENST00000476985;ENST00000453942;ENST00000450737;ENST00000447133" "ENSP00000392392;ENSP00000397058;ENSP00000399665;ENSP00000228820;ENSP00000395062;ENSP00000387481;ENSP00000405385" "Q9NR21" "PARP11" "57097" "poly(ADP-ribose) polymerase family member 11" "ARTD11;C12orf6" "Nucleus;Cytosol" "SwissProt;CellAtlas"
"ENSG00000111237" "ENST00000549578;ENST00000360579;ENST00000621131;ENST00000552130;ENST00000447578;ENST00000546588;ENST00000548539;ENST00000549970;ENST00000548259;ENST00000553128;ENST00000551655;ENST00000550267" "ENSP00000447058;ENSP00000353786;ENSP00000480853;ENSP00000449954;ENSP00000400048;ENSP00000449044;ENSP00000447634" "Q9UBQ0" "VPS29" "51699" "VPS29 retromer complex component" "DC15;DC7;PEP11" "Cytosol" "SwissProt;CellAtlas"
"ENSG00000111261" "ENST00000535902;ENST00000396349;ENST00000545735;ENST00000543314" "ENSP00000438205;ENSP00000379638;ENSP00000445303;ENSP00000437624" "Q9H8J5" "MANSC1" "54682" "MANSC domain containing 1" "FLJ10298;LOH12CR3" "Golgi apparatus" "CellAtlas"
"ENSG00000111271" "ENST00000511915;ENST00000514615;ENST00000509936;ENST00000413681;ENST00000549590;ENST00000455480;ENST00000552965;ENST00000507135;ENST00000515283;ENST00000313698;ENST00000502746;ENST00000552706;ENST00000514847;ENST00000507683;ENST00000503490;ENST00000508303;ENST00000552177;ENST00000504803;ENST00000546647;ENST00000505487;ENST00000550198;ENST00000507688;ENST00000547491;ENST00000512792" "ENSP00000421527;ENSP00000446959;ENSP00000389813;ENSP00000446998;ENSP00000449097;ENSP00000325137;ENSP00000447561;ENSP00000446711" "Q6JQN1" "ACAD10" "80724" "acyl-CoA dehydrogenase family member 10" "MGC5601" "Mitochondria" "DeepLoc2"
"ENSG00000111275" "ENST00000416293;ENST00000261733;ENST00000548536;ENST00000549106;ENST00000551450" "ENSP00000403349;ENSP00000261733;ENSP00000448179;ENSP00000474669" "P05091" "ALDH2" "217" "aldehyde dehydrogenase 2 family member" "" "Mitochondria" "SwissProt"
"ENSG00000111339" "ENST00000228936;ENST00000430129;ENST00000544616;ENST00000420600" "ENSP00000228936;ENSP00000412735;ENSP00000442877;ENSP00000405689" "Q93070" "ART4" "420" "ADP-ribosyltransferase 4 (inactive) (Dombrock blood group)" "ARTC4;CD297;DO;DOK1" "Cytosol" "CellAtlas"
"ENSG00000111371" "ENST00000398637;ENST00000549049;ENST00000439706;ENST00000546893;ENST00000552197;ENST00000548979;ENST00000549633;ENST00000551506;ENST00000550173;ENST00000546519;ENST00000612161" "ENSP00000381634;ENSP00000449607;ENSP00000398142;ENSP00000447853;ENSP00000449756;ENSP00000449744;ENSP00000478907" "Q9H2H9" "SLC38A1" "81539" "solute carrier family 38 member 1" "ATA1;NAT2;SAT1" "Cell membrane;Lysosome" "DeepLoc2"
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