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DWI derivatives: Provide diffusivity units #53

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DWI derivatives: Provide diffusivity units #53

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DWI derivatives: Provide diffusivity units
Lestropie Aug 10, 2022
622dd5c
Merge branch 'bep-016' into diffusivity_units
Lestropie Sep 12, 2022
3e43e31
Merge branch 'bep-016' into diffusivity_units
Lestropie Sep 12, 2022
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34 changes: 22 additions & 12 deletions src/05-derivatives/05-diffusion-derivatives.md
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Original file line number Diff line number Diff line change
Expand Up @@ -520,16 +520,16 @@ another.
my_diffusion_pipeline/
sub-01/
dwi/
sub-01_model-bs_param-bzero_model.nii.gz
sub-01_model-bs_param-bzero_model.json
sub-01_model-bs_param-md_mdp.nii.gz
sub-01_model-bs_param-md_mdp.json
sub-01_model-bs_param-stdd_mdp.nii.gz
sub-01_model-bs_param-stdd_mdp.json
sub-01_model-bs_param-sticks_mdp.nii.gz
sub-01_model-bs_param-sticks_mdp.json
sub-01_model-bs_param-sticks_model.nii.gz
sub-01_model-bs_param-sticks_model.json
sub-01_model-bs_param-bzero_desc-mean_model.nii.gz
sub-01_model-bs_param-bzero_desc-mean_model.json
sub-01_model-bs_param-md_desc-mean_mdp.nii.gz
sub-01_model-bs_param-md_desc-mean_mdp.json
sub-01_model-bs_param-stdd_desc-mean_mdp.nii.gz
sub-01_model-bs_param-stdd_desc-mean_mdp.json
sub-01_model-bs_param-sticks_desc-mean_mdp.nii.gz
sub-01_model-bs_param-sticks_desc-mean_mdp.json
sub-01_model-bs_param-sticks_desc-merged_model.nii.gz
sub-01_model-bs_param-sticks_desc-merged_model.json
sub-01_model-bs_model.json
```

Expand All @@ -539,8 +539,18 @@ another.
Dimensions of NIfTI image "`sub-01_model-bs_param-sticks_mdp.nii.gz`": *I*x*J*x*K*x9 ([spherical coordinates](#data-spherical), distance from origin encodes fibre volume fraction)
Dimensions of NIfTI image "`sub-01_model-bs_param-sticks_model.nii.gz`": *I*x*J*x*K*x9x50 ([spherical coordinates](#data-spherical), distance from origin encodes fibre volume fraction; 50 bootstrap realisations)

Contents of JSON files "`sub-01_model-bs_param-sticks_mdp.json`"
and "`sub-01_model-bs_param-sticks_model.json`" (contents of two
Contents of JSON files "`sub-01_model-bs_param-md_desc-mean_model.json`"
and "`sub-01_model-bs_param-stdd_model.json`" (contents of two
files are identical):

```JSON
{
"Units": "mm^2/s"
}
```

Contents of JSON files "`sub-01_model-bs_param-sticks_desc-mean_model.json`"
and "`sub-01_model-bs_param-sticks_desc-merged_model.json`" (contents of two
files are identical):

```JSON
Expand Down