fix: [#256] cancer and multiassay support pull_sheets.py #332
main.yml
on: pull_request
Matrix: linting
cancel-previous
2s
Matrix: testing
Annotations
1 error and 4 warnings
linting (3.12)
The process '/usr/share/miniconda/condabin/conda' failed with exit code 1
|
linting (3.12)
'nodefaults' channel detected: will remove 'defaults' if added implicitly. In the future, 'nodefaults' to remove 'defaults' won't be supported. Please set 'conda-remove-defaults' = 'true' in setup-miniconda to remove this warning.
|
linting (3.12)
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:202: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
linting (3.12)
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
Traceback (most recent call last):
File "/usr/share/miniconda/lib/python3.12/site-packages/conda/exception_handler.py", line 18, in __call__
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.12/site-packages/conda/cli/main.py", line 61, in main_subshell
exit_code = do_call(args, parser)
^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.12/site-packages/conda/cli/conda_argparse.py", line 205, in do_call
result = getattr(module, func_name)(args, parser)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.12/site-packages/conda/notices/core.py", line 132, in wrapper
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.12/site-packages/conda/cli/main_env_update.py", line 161, in execute
result[installer_type] = installer.install(prefix, specs, args, env)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.12/site-packages/conda/env/installers/conda.py", line 51, in install
unlink_link_transaction = solver.solve_for_transaction(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.12/site-packages/conda/core/solve.py", line 153, in solve_for_transaction
unlink_precs, link_precs = self.solve_for_diff(
^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.12/site-packages/conda/core/solve.py", line 222, in solve_for_diff
final_precs = self.solve_final_state(
^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.12/site-packages/conda_libmamba_solver/solver.py", line 181, in solve_final_state
out_state = self._solving_loop(in_state, out_state, index)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.12/site-packages/conda/common/io.py", line 87, in decorated
return f(*args, **kwds)
^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.12/site-packages/conda_libmamba_solver/solver.py", line 307, in _solving_loop
solved, outcome = self._solve_attempt(in_state, out_state, index, attempt=attempt)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.12/site-packages/conda_libmamba_solver/solver.py", line 356, in _solve_attempt
jobs = self._specs_to_request_jobs(in_state, out_state)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.12/site-packages/conda_libmamba_solver/solver.py", line 409, in _specs_to_request_jobs
libmamba_spec = self._conda_spec_to_libmamba_spec(conda_spec)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.12/site-packages/conda_libmamba_solver/solver.py", line 890, in _conda_spec_to_libmamba_spec
return LibmambaMatchSpec.parse(str(spec))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
libmambapy.bindings.specs.ParseError: Error parsing version "'3.12". Version contains invalid characters in '3.12.
`$ /usr/share/miniconda/condabin/conda env update --name test --file /home/runner/work/cubi-tk/cubi-tk/setup-miniconda-patched-environment.yaml`
environment variables:
CIO_TEST=<not set>
CONDA=/usr/share/miniconda
CONDA_ROOT=/usr/share/miniconda
CURL_CA_BUNDLE=<not set>
DEPLOYMENT_BASEPATH=/opt/runner
GITHUB_EVENT_PATH=/home/runner/work/_temp/_github_workflow/event.json
GITHUB_PATH=/home/runner/work/_temp/_runner_file_commands/add_path_1ed84017-90a6-
4594-86fc-457ab2dae69c
LD_PRELOAD=<not set>
|
linting (3.12)
Upload did not complete.
|