fix warnings

gagneurlab · Apr 16, 2024 · a97d4da · a97d4da
1 parent 550235a
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Showing 4 changed files with 17 additions and 1 deletion.
diff --git a/R/example_functions.R b/R/example_functions.R
@@ -10,6 +10,8 @@
 #'                \code{FRASER_output} in the current working directory.
 #' @param rerun Defaults to \code{FALSE}. If set to \code{TRUE} it reruns the
 #'                full fit of the model.
+#' @param metrics The splice metrics that should be included in the test fds. 
+#'              One or several of 'jaccard', 'psi5', 'psi3' or 'theta'.
 #' @return A FraserDataSet object that contains a test case 
 #' 
 #' @examples

diff --git a/R/getNSetterFuns.R b/R/getNSetterFuns.R
@@ -10,6 +10,9 @@
 #' @param level Indicates if the retrieved p values should be adjusted on the 
 #'          donor/acceptor site-level (default) or if unadjusted junction-level 
 #'          p values should be returned.
+#' @param subsetName The name of a subset of genes of interest for which FDR 
+#'          corrected pvalues were previously computed. 
+#'          Default is NULL (using transcriptome-wide FDR corrected pvalues).
 #' @param filters A named list giving the filters that were applied for masking 
 #'          during p value correction. Used for storing and retrieving the 
 #'          correct set of requested p values.

diff --git a/man/createTestFraserDataSet.Rd b/man/createTestFraserDataSet.Rd
diff --git a/man/getter_setter_functions.Rd b/man/getter_setter_functions.Rd