pull also docker #22
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| # This is a basic workflow to help you get started with Actions | |
| name: CI | |
| env: | |
| GITLAB_ACCESS_TOKEN: ${{ secrets.GITLAB_ACCESS_TOKEN }} | |
| # Controls when the workflow will run | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the "main" branch | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| MEPHIT: | |
| name: Build and test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update && apt-get install -y -q --no-install-recommends \ | |
| apt-transport-https \ | |
| build-essential \ | |
| ca-certificates \ | |
| curl \ | |
| libssl-dev \ | |
| openssh-client \ | |
| rsync \ | |
| wget \ | |
| git \ | |
| gfortran \ | |
| ninja-build \ | |
| cmake \ | |
| python3 \ | |
| python3-dev \ | |
| python3-pip \ | |
| python3-venv | |
| sudo apt-get install -y -q --no-install-recommends \ | |
| procps \ | |
| nano \ | |
| vim \ | |
| htop \ | |
| ncdu \ | |
| less \ | |
| gdb \ | |
| cmake-curses-gui | |
| sudo apt-get install -y -q --no-install-recommends \ | |
| pkg-config \ | |
| libsuitesparse-dev \ | |
| libopenblas-dev \ | |
| libsuperlu-dev \ | |
| libhdf5-dev \ | |
| libhdf5-openmpi-dev \ | |
| libnetcdf-dev \ | |
| libnetcdff-dev \ | |
| libfftw3-dev \ | |
| libgsl-dev \ | |
| libopenmpi-dev \ | |
| libscalapack-openmpi-dev \ | |
| libpcre3-dev \ | |
| libreadline-dev \ | |
| h5utils \ | |
| hdf5-tools \ | |
| netcdf-bin | |
| sudo apt-get install -y -q --no-install-recommends \ | |
| python3-wheel python3-setuptools \ | |
| # Shell and file formats | |
| python3-ipython jupyter python3-sphinx python3-matplotlib \ | |
| python3-openpyxl python3-xlrd python3-h5py python3-netcdf4 \ | |
| # Scientific computing | |
| python3-sympy python3-uncertainties python3-numpy python3-scipy \ | |
| python3-numba \ | |
| # Statistics | |
| python3-pandas python3-sklearn python3-torch \ | |
| # For OMFIT | |
| python3-boto3 python3-lmfit python3-configobj python3-dill \ | |
| python3-pyodbc python3-pyotp \ | |
| # Misc | |
| fortran-language-server python3-tqdm python3-pytest \ | |
| python3-mpi4py python3-skbuild | |
| mkdir -p ~/venv | |
| python3 -m venv --system-site-packages ~/venv/plasma | |
| python -m pip install pylance black f90wrap | |
| echo 'export PATH=~/bin:$PATH' >> ~/.bashrc && \ | |
| echo 'export LD_LIBRARY_PATH=~/bin:$LD_LIBRARY_PATH' >> ~/.bashrc && \ | |
| echo 'export STELLOPT_PATH="/src/STELLOPT"' >> ~/.bashrc && \ | |
| echo 'export MACHINE="ubuntu"' >> ~/.bashrc && \ | |
| echo 'export OMPI_ALLOW_RUN_AS_ROOT=1' >> ~/.bashrc && \ | |
| echo 'export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1' >> ~/.bashrc && \ | |
| echo '. ~/venv/plasma/bin/activate' >> ~/.bashrc | |
| - name: Initialize Gitlab access token | |
| run: | | |
| git config --global credential.helper store | |
| echo "https://x-access-token:[email protected]" >> ~/.git-credentials | |
| - name: libneo | |
| run: | | |
| git clone https://github.com/itpplasma/libneo.git | |
| - name: NEO-2 | |
| run: | | |
| git clone https://github.com/itpplasma/NEO-2.git | |
| - name: NEO-RT | |
| run: | | |
| mkdir contrib | |
| cd contrib | |
| git clone [email protected]:itpplasma/quadpack | |
| git clone [email protected]:itpplasma/vode | |
| cd .. | |
| git clone [email protected]:itpplasma/spline | |
| git clone [email protected]:itpplasma/BOOZER_MAGFIE | |
| git clone [email protected]:itpplasma/NEO-RT | |
| - name: SIMPLE | |
| run: | | |
| git clone [email protected]:itpplasma/SIMPLE | |
| - name: GORILLA | |
| run: | | |
| git clone https://github.com/itpplasma/GORILLA.git | |
| - name: MEPHIT | |
| run: | | |
| git clone https://gitlab.tugraz.at/plasma/codes/MEPHIT.git | |
| - name: KIM | |
| run: | | |
| git clone https://gitlab.tugraz.at/plasma/codes/MEPHIT.git |