v2.14

Upgrading the Python build system. Nothing major.

v2.13

Includes a minor fix to make NovaSeq sequencing results work again.

For some reason the vast majority of bases that are generated by NovaSeq seem to have a quality score of 30. As a result, the C33 check in iu-filter-quality-minoche fails all of them since it expects an over average Q30. With this change those reads are kept in downstream analyses.

v2.12

Includes a fix for an iu-trim-fastq bug that treated compressed input/output files reported in #29 by @FlorianTrigodet.

v2.11

Includes a fix for the quality curve generation step reported in #28.

v2.10

Performance improvements for iu-subsample-fastq.

v2.9

@semiller10 presents v2.9 with minor updates, including the following:

• Forward and reverse reads now can be of different lengths in read merging.
• Multithreading chunk evenness fix in read merging.

v2.8

Minor bug fix for multi-threaded merging of paired-end reads.

v2.7

Critical improvements and numerous bug fixes by Sam Miller, including multi-threading support and rapid merging options for iu-merge-paris.

v2.6

A new program: iu-fasta-to-fastq (in case you have no idea ended up with silly FASTA files, and you really really need them in another silly format with made up base quality scores).

v2.5

iu-remove-ids-from-fastq now has a --delimiter parameter for those who wish to have more control over how IDs in FASTQ files should be matched to IDs of interest.