[FEATURE] Implement Automated NMDC Workflow Data Ingestion Pipeline for JAMO

[Shalsh23]

Overview

We need to establish a systematic process for ingesting NMDC workflow outputs from CFS into JAMO. This will enable better data management, systematic storage, and efficient retrieval mechanisms while leveraging JAMO's advanced features.

Current Status

• Workflow outputs currently reside on CFS
• No automated ingestion process exists
• Manual ingestion is time-consuming and error-prone

Objectives

1. Establish standardized JAT templates for all workflow types
2. Implement and validate ingestion process
3. Automate the entire ingestion pipeline

Implementation Tasks

• Develop JAT templates #366

  • Identify all workflow types requiring templates
  • Create standardized templates following JAMO specifications
  • Document template structure and usage

• Validate NMDC JAT Templates Through Test Ingestion #367

  • Perform manual ingestion tests using sample workflow data
  • Verify data integrity post-ingestion
  • Document any issues or edge cases

• Automation Development

  • Develop script for automated ingestion
  • Implement error handling and logging
  • Add validation checks

• Production Deployment

  • Execute full data ingestion
  • Monitor and verify results
  • Document operational procedures

Technical Resources

Reference Documentation

• NMDC Workflow Execution Documentation
• JAT Templates Documentation

Related Code & Resources

• Template Repository
• Previous Implementation
• Squad Documentation

Success Criteria

• All workflow data successfully ingested into JAMO
• Automated pipeline operational and documented
• Error handling and recovery procedures in place
• Documentation complete and accessible

Dependencies

• Access to CFS and JAMO systems
• Required permissions and credentials

cc @shreddd @aclum @kaijli