Reference of Metagenome in MetaT related yamls

[kaijli]

nmdc_automation/nmdc_automation/config/workflows/workflows-mt.yaml

Lines 7 to 15 in fb1baa3

	- Metagenome Raw Read 1
	- Metagenome Raw Read 2
	- Name: Sequencing Interleaved
	Collection: data_generation_set
	Enabled: True
	Analyte Category: Metatranscriptome
	Filter Output Objects:
	- Metagenome Raw Reads

nmdc_automation/configs/import-mt.yaml

Lines 4 to 22 in fb1baa3

	Type: nmdc:ReadQcAnalysis
	Git_repo: https://github.com/microbiomedata/metaT_ReadsQC
	Version: v0.0.7
	Collection: workflow_execution_set
	WorkflowExecutionRange: ReadQcAnalysis
	Inputs:
	- Metagenome Raw Reads
	Workflow_Execution:
	name: "Read QC for {id}"
	input_read_bases: "{outputs.stats.input_read_bases}"
	input_read_count: "{outputs.stats.input_read_count}"
	output_read_bases: "{outputs.stats.output_read_bases}"
	output_read_count: "{outputs.stats.output_read_count}"
	type: nmdc:ReadQcAnalysis
	Outputs:
	- Filtered Sequencing Reads
	- QC Statistics
	- rRNA Filtered Sequencing Reads
	- Read Filtering Info File

🔴 I believe these should say Metatranscriptome instead of Metagenome. Unless my understanding of the workflows and data types is totally wrong.

🟡 Also raising a flag that ReadsQC workflow task is called the same nmdc:ReadQcAnalysis for both metaG and metaT but none of the other workflow execution IDs are the same (whereas if we are naming based off whether they're the same WDL workflow or not, only nmdc:MetagenomeAnnotation would be the same)