merge: Support sequences with cross-checking #2939

Job	Run time
mypy	53s
pathogen-repo-ci (dengue)	2m 51s
check-docs	38s
pathogen-repo-ci (lassa)	52s
pathogen-repo-ci-v0 (avian-flu)	52s
pyright	22s
pathogen-repo-ci (measles)	1m 32s
pathogen-repo-ci-v0 (ebola)	56s
pathogen-repo-ci (mpox)	1m 25s
pathogen-repo-ci-v0 (mumps)	1m 2s
test (python=3.8 biopython=1.80)	11m 47s
pathogen-repo-ci (seasonal-cov)	1m 47s
pathogen-repo-ci-v0 (ncov)	1m 14s
pathogen-repo-ci (zika)	58s
test (python=3.8 biopython=latest)	12m 15s
pathogen-repo-ci-v0 (rsv)	8m 30s
test (python=3.9 biopython=1.80)	12m 54s
pathogen-repo-ci-v0 (seasonal-flu)	1m 6s
test (python=3.9 biopython=latest)	12m 53s
pathogen-repo-ci-v0 (tb)	1m 14s
test (python=3.10 biopython=1.80)	12m 26s
test (python=3.10 biopython=latest)	12m 27s
test (python=3.11 biopython=1.80)	12m 31s
test (python=3.11 biopython=latest)	12m 43s
build-docs / build	2m 21s
codecov	15s
release	0s
rebuild-docker-image	0s
	2h 8m 44s

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